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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00028341-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | NAC | ||||||||
Protein Properties | Length: 183aa MW: 21416.7 Da PI: 8.5885 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 86.6 | 4.7e-27 | 28 | 153 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lp G+rF+Pt el+++yL +k++g+kl+ + v++ ++y++eP +Lp + ++ +++e +fF+ +k+++++ + r+ ++gyWk SMil_00028341-RA_Salv 28 LPFGYRFDPTSVELLQNYLIPKLRGEKLPSDCVMDLDHLYTYEPPQLPfNlFIHCKKDEAFFFTADVRKSSEEESQIRTSSNGYWKVY 115 689**************************9555666689*********53555667789***************************98 PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++v ge+vg k+ L f+ +g++tdW m eyr SMil_00028341-RA_Salv 116 KDREAVDI-AGEVVGFKTKLLFH---GVHGNRTDWKMIEYRC 153 77777766.999**********9...677889********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.06E-30 | 19 | 174 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 29.283 | 28 | 174 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.0E-16 | 29 | 152 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
LDSFFLLELK LRKRDAMRSS STSRELNLPF GYRFDPTSVE LLQNYLIPKL RGEKLPSDCV 60 MDLDHLYTYE PPQLPFNLFI HCKKDEAFFF TADVRKSSEE ESQIRTSSNG YWKVYKDREA 120 VDIAGEVVGF KTKLLFHGVH GNRTDWKMIE YRCHPTLIPN GVAKRYIVCK IKLKTVNEEK 180 ELS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-20 | 18 | 152 | 5 | 139 | Stress-induced transcription factor NAC1 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15132 | 6 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17260.1 | 3e-20 | NAC domain containing protein 86 |