PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00028099-RA_Salv

Common Name

MYB99

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

MYB

Protein Properties

Length: 575aa MW: 65934.8 Da PI: 5.1023

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00028099-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.5	2e-15	22	69	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ede+l+ av+qlG ++W +I + g+ R +k+c++rw +yl SMil_00028099-RA_Salv 22 KGAWSKDEDEKLKTAVEQLGDKNWVRIEKFSGLARPAKNCRLRWINYL 69 79********************************************97 PP
2	Myb_DNA-binding	43.3	8.3e-14	77	118	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++T++E++l+ ++++ +G+ W++Ia++++ gR+++++k++w+k SMil_00028099-RA_Salv 77 PFTKQEQDLIFQLHATYGNA-WSRIASHLP-GRSDNEIKNFWHK 118 79****************.*****.*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	23.054	17	73	IPR017930	Myb domain
SuperFamily	SSF46689	4.87E-27	19	116	IPR009057	Homeodomain-like
SMART	SM00717	4.6E-12	21	71	IPR001005	SANT/Myb domain
Pfam	PF00249	2.7E-13	22	69	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-18	23	76	IPR009057	Homeodomain-like
CDD	cd00167	6.16E-10	24	69	No hit	No description
SMART	SM00717	4.0E-13	74	122	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	17.483	74	124	IPR017930	Myb domain
CDD	cd00167	2.21E-10	77	118	No hit	No description
Gene3D	G3DSA:1.10.10.60	7.0E-22	77	123	IPR009057	Homeodomain-like
Pfam	PF00249	8.5E-13	77	118	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 575 aa Download sequence Send to blast
LSLLDPSNSN SWMSEAETRH RKGAWSKDED EKLKTAVEQL GDKNWVRIEK FSGLARPAKN 60 CRLRWINYLR PNLKKYPFTK QEQDLIFQLH ATYGNAWSRI ASHLPGRSDN EIKNFWHKSA 120 KKRQREGLRI SPINIDSSQT MISTSQSHFQ LKLPPFSPMP APSQTCLPIQ DSYSTVESDF 180 FPTQPITQLP SIQFNPVETL GENSYMHQVK SDSNLEIINE LRKARARVRF LEKKLRQRGI 240 SNKRNNFKQS SRNDHLFIKS PQGAHLLTTH VPLDENSSRM EEITEDISRR KDDIQDSTVI 300 SATNLQETER SVSEESRHSE MSTHGENSDS KASLHKGFER EEDLFDEICN VKNSETFPEQ 360 RHHNYHVNSQ YNVIAPNWNL WNECSSSLLQ ELEEDLFGER SQIDQPSSPK RHMDALGAVY 420 SQSSATTLEG DESGQHFKCS MGQEFSDGLD IRFPDSNLGP ESLPVNQNTA VGLVECSYLV 480 SQPVAVHESM GRQDFSLQTS GENISPTQPC QSSFIEHQYH EAQQCSLDEF YGGMTESTSG 540 EETWKQELME DLVVDNLWVE DENFFFNTYD YDSPC

Sequence ? help Back to Top

Protein Sequence Length: 575 aa Download sequence Send to blast

LSLLDPSNSN SWMSEAETRH RKGAWSKDED EKLKTAVEQL GDKNWVRIEK FSGLARPAKN  60
CRLRWINYLR PNLKKYPFTK QEQDLIFQLH ATYGNAWSRI ASHLPGRSDN EIKNFWHKSA  120
KKRQREGLRI SPINIDSSQT MISTSQSHFQ LKLPPFSPMP APSQTCLPIQ DSYSTVESDF  180
FPTQPITQLP SIQFNPVETL GENSYMHQVK SDSNLEIINE LRKARARVRF LEKKLRQRGI  240
SNKRNNFKQS SRNDHLFIKS PQGAHLLTTH VPLDENSSRM EEITEDISRR KDDIQDSTVI  300
SATNLQETER SVSEESRHSE MSTHGENSDS KASLHKGFER EEDLFDEICN VKNSETFPEQ  360
RHHNYHVNSQ YNVIAPNWNL WNECSSSLLQ ELEEDLFGER SQIDQPSSPK RHMDALGAVY  420
SQSSATTLEG DESGQHFKCS MGQEFSDGLD IRFPDSNLGP ESLPVNQNTA VGLVECSYLV  480
SQPVAVHESM GRQDFSLQTS GENISPTQPC QSSFIEHQYH EAQQCSLDEF YGGMTESTSG  540
EETWKQELME DLVVDNLWVE DENFFFNTYD YDSPC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	7e-22	22	123	7	107	B-MYB
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF059453	0.0	KF059453.1 Salvia miltiorrhiza MYB-related transcription factor (MYB99) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A059PRF7	0.0	A0A059PRF7_SALMI; MYB-related transcription factor

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G26930.1	2e-36	myb domain protein 97

Publications ? help Back to Top
Li C,Lu S Genome-wide characterization and comparative analysis of R2R3-MYB transcription factors shows the complexity of MYB-associated regulatory networks in Salvia miltiorrhiza. BMC Genomics, 2014. 15: p. 277 [PMID:24725266]