PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00027931-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family DBB
Protein Properties Length: 253aa    MW: 27653.2 Da    PI: 5.126
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00027931-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.81.7e-06447542
               zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                            C+ +e  e++  C  ++  lC +C ++ H        H++vpl
  SMil_00027931-RA_Salv  4 QCNVCEAAEAKVLCCADEAALCTECDQKVHAAnklaskHQRVPL 47
                           7******99*********************66899999999986 PP
2zf-B_box28.92.3e-095294137
               zf-B_box  1 seerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                           s+++kC+ ++e    +fC +++ llC+ C ++ H        H
  SMil_00027931-RA_Salv 52 SQKPKCDICQETVGYFFCLEDRALLCRRCDVSVHTAnrlvaaH 94
                           5899********9*********************544555556 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.708147IPR000315B-box-type zinc finger
CDDcd000214.53E-7347No hitNo description
SMARTSM003365.0E-9447IPR000315B-box-type zinc finger
PROSITE profilePS501199.3285299IPR000315B-box-type zinc finger
SMARTSM003362.7E-155299IPR000315B-box-type zinc finger
PfamPF006431.7E-75393IPR000315B-box-type zinc finger
CDDcd000215.37E-85599No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MKIQCNVCEA AEAKVLCCAD EAALCTECDQ KVHAANKLAS KHQRVPLSTC SSQKPKCDIC  60
QETVGYFFCL EDRALLCRRC DVSVHTANRL VAAHQRFLLT GVKVGLEATK LDPAPPTTTD  120
LPAQGQGDIS SSKFPQTGGS MSQWPLDEFL ELGDYTHKYD FMDPTGPSKS EADCGKFGDA  180
DWSPVVQVAD MELEGDEQNT CFWTVPEIPS PPTASGLHSW SHSAAFVPDI ISLPDHHRPH  240
RDGPVSDRLV PRV
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011098187.15e-97B-box zinc finger protein 22
SwissprotQ9SYM29e-74BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A4D8ZW481e-116A0A4D8ZW48_SALSN; Uncharacterized protein
STRINGMigut.M00693.1.p9e-91(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28922346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.19e-72light-regulated zinc finger protein 1