PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00027465-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

M-type_MADS

Protein Properties

Length: 312aa MW: 34361.3 Da PI: 8.945

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00027465-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	93.4	1.1e-29	184	233	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+++fss+g+ly y+ SMil_00027465-RA_Salv 184 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYIYA 233 79*********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	5.3E-37	176	235	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	30.249	176	236	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.9E-30	178	198	IPR002100	Transcription factor, MADS-box
CDD	cd00265	2.80E-36	179	235	No hit	No description
SuperFamily	SSF55455	1.7E-27	179	238	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.1E-25	185	231	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.9E-30	198	213	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.9E-30	213	234	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
LSSSSPEPSS STHVAPTFFS SSLSSFPLYP PSPPTPIYLA LLAASFLAFV SFFEICCGSH 60 SRRCARAGCR GLKRGGGYDK PCLLAELRNM APPNGSTVLL SCLLCGCPIS KLEGFESMLL 120 CRSWIIARVL LVEFLCKFLV DGFGITSLAA LLIDQATTVL FLMRNRIRVV KFDEEKLEGK 180 IQIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL VVFSSRGRLY IYANNRLWHG 240 VWWFTLVVWL IRLASSYLIQ KSVLGGCPLD GSLVIGRPPS SASVPEIGVL LYPAASASHD 300 TMELFPFPSY SL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1n6j_A	1e-17	180	237	4	61	Myocyte-specific enhancer factor 2B
1n6j_B	1e-17	180	237	4	61	Myocyte-specific enhancer factor 2B
1tqe_P	1e-17	180	237	5	62	Myocyte-specific enhancer factor 2B
1tqe_Q	1e-17	180	237	5	62	Myocyte-specific enhancer factor 2B
1tqe_R	1e-17	180	237	5	62	Myocyte-specific enhancer factor 2B
1tqe_S	1e-17	180	237	5	62	Myocyte-specific enhancer factor 2B
6c9l_A	1e-17	180	237	5	62	Myocyte-specific enhancer factor 2B
6c9l_B	1e-17	180	237	5	62	Myocyte-specific enhancer factor 2B
6c9l_C	1e-17	180	237	5	62	Myocyte-specific enhancer factor 2B
6c9l_D	1e-17	180	237	5	62	Myocyte-specific enhancer factor 2B
6c9l_E	1e-17	180	237	5	62	Myocyte-specific enhancer factor 2B
6c9l_F	1e-17	180	237	5	62	Myocyte-specific enhancer factor 2B

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58780.2	3e-32	MIKC_MADS family protein