PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

SMil_00027418-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

C2H2

Protein Properties

Length: 279aa MW: 31555.7 Da PI: 6.2863

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00027418-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00027	94	116	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C + Fs++ L H++ H SMil_00027418-RA_Salv 94 FTCNFCWREFSTSQALGGHQNAH 116 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.7E-6	91	121	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.5E-4	92	120	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.261	94	121	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	96	116	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MESLEPCHSE ASNISVTSKD NKTIEEDENE EEEYGTRYET TSRVGLDLEM ANTELMNKRN 60 PNSKLHELNL FDSLNPSEST EEGRNPKPSK SKTFTCNFCW REFSTSQALG GHQNAHKQER 120 ALAKHRHNMV DLTAAPGAPP PPYGHQLQGY SYYPYSTFHQ QLPNFYGGFN RSHGVRSQSN 180 MIQKPYSYHQ SPSLSPSPLA YCLTREKMPR ANYMIDPSTS SSSTPDYGMK MENFQSHKFD 240 FGVINPNPST KTNEDDKRLR LGNVDDGKDA SGLDLDLKL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011086308.1	1e-61	zinc finger protein 3-like
TrEMBL	A0A4D9B2P5	1e-100	A0A4D9B2P5_SALSN; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3967	21	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10970.1	2e-15	C2H2 family protein