PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Basic Information? help Back to Top

TF ID

SMil_00027357-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

C2H2

Protein Properties

Length: 493aa MW: 56587.5 Da PI: 9.0496

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00027357-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.5	0.00092	336	354	2	20
EETTTTEEESSHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHi 20 +C++Cg+ ks+L++H+ SMil_00027357-RA_Salv 336 TCKKCGTISVKKSLLQNHM 354 8*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF09745	2.4E-19	1	67	IPR018612	Domain of unknown function DUF2040
Pfam	PF16134	4.3E-12	134	203	IPR032302	THO complex subunit 2, N-terminal domain

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence Send to blast
LIDKAKQRER EHEIVYERKL AKERSQDEHL YADKDKFVTS AYKKKLAEQA KWVEEERLRE 60 LREQKDDLAG PAFDANGMIY GPQTPGVYAR GSQAEWLHMQ SDVYLLDFYI HSDWVLSLQL 120 FKIGTLLNWC GQSMAKWLVE SALVPLRFFQ ERCDEEFLWE SEMIKIKAAD LKSKEVRVNT 180 RILYQQTKFN LLREESEGYA KLFQPTSPPL PTPMLLRLTL PTFACCIMVV QNLGKIQYSV 240 RSKTKSFKKN KKKTKLKIAS GGGGGPPGGP PSKAIYPWLT LPELADLLES DKRIVCLHPA 300 CKTKRNQKPI MFRTKSDLVN HWNAEHKDDV EAATCTCKKC GTISVKKSLL QNHMEDTKSY 360 FRCPALPFET KCRMIARMKE ETTWAKNFKA KANNSWRLLM IHHYNYLTDL LREIPGREAL 420 KLRQMLLLWH HIYGSKDQCL YGCFLLVLEN PELEGVVDGA MVEVEGTTTL NSEAVEAGNR 480 AAIAGGLQGF RSE

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence Send to blast

LIDKAKQRER EHEIVYERKL AKERSQDEHL YADKDKFVTS AYKKKLAEQA KWVEEERLRE  60
LREQKDDLAG PAFDANGMIY GPQTPGVYAR GSQAEWLHMQ SDVYLLDFYI HSDWVLSLQL  120
FKIGTLLNWC GQSMAKWLVE SALVPLRFFQ ERCDEEFLWE SEMIKIKAAD LKSKEVRVNT  180
RILYQQTKFN LLREESEGYA KLFQPTSPPL PTPMLLRLTL PTFACCIMVV QNLGKIQYSV  240
RSKTKSFKKN KKKTKLKIAS GGGGGPPGGP PSKAIYPWLT LPELADLLES DKRIVCLHPA  300
CKTKRNQKPI MFRTKSDLVN HWNAEHKDDV EAATCTCKKC GTISVKKSLL QNHMEDTKSY  360
FRCPALPFET KCRMIARMKE ETTWAKNFKA KANNSWRLLM IHHYNYLTDL LREIPGREAL  420
KLRQMLLLWH HIYGSKDQCL YGCFLLVLEN PELEGVVDGA MVEVEGTTTL NSEAVEAGNR  480
AAIAGGLQGF RSE

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP257474	5e-46	KP257474.1 Salvia miltiorrhiza clone 41 basic helix-loop-helix transcription factor mRNA, complete cds.
GenBank	KP257517	5e-46	KP257517.1 Salvia miltiorrhiza clone 84 basic helix-loop-helix transcription factor mRNA, complete cds.