PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

HD-ZIP

Protein Properties

Length: 207aa MW: 24069.2 Da PI: 7.5938

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00027288-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66	5.2e-21	55	107	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++++eq++ Lee+F +++++ +++e+LA++lgL+ rqV vWFqNrRa++k SMil_00027288-RA_Salv 55 KRKLSSEQVKMLEECFGSEQKLESDRKERLAAELGLDPRQVAVWFQNRRARWK 107 45899***********************************************9 PP
2	HD-ZIP_I/II	112.7	2.4e-36	54	145	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kr+ls+eqvk+LEe+F +e+kLe++rK++la eLgl+prqvavWFqnrRAR+k+ +l ++y++Lk+ + + + +++rLe+e +L+e SMil_00027288-RA_Salv 54 RKRKLSSEQVKMLEECFGSEQKLESDRKERLAAELGLDPRQVAVWFQNRRARWKSNKLHEEYSKLKSDHHTAVLHKCRLETELLKLKE 141 8*************************************************************************************** PP HD-ZIP_I/II 90 elke 93 +l+e SMil_00027288-RA_Salv 142 QLHE 145 *986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.601	49	109	IPR001356	Homeobox domain
SMART	SM00389	3.3E-19	52	113	IPR001356	Homeobox domain
CDD	cd00086	1.21E-16	54	110	No hit	No description
Pfam	PF00046	2.3E-18	55	107	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.8E-18	55	119	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.1E-21	56	116	IPR009057	Homeodomain-like
PRINTS	PR00031	4.2E-6	80	89	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	84	107	IPR017970	Homeobox, conserved site
PRINTS	PR00031	4.2E-6	89	105	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MNPEALVDEQ MPLISQYYPD PDGIYTQFVP QPGAAKTKAR RRRRKSKGIE GVMRKRKLSS 60 EQVKMLEECF GSEQKLESDR KERLAAELGL DPRQVAVWFQ NRRARWKSNK LHEEYSKLKS 120 DHHTAVLHKC RLETELLKLK EQLHEAEKEI QRLSDGFSSN SPCSSFSMEV GAPFLGEFGM 180 EGLENVFYTS DQNYSAHGME WDNLYYM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	40	56	RRRRKSKGIEGVMRKRK
2	41	46	RRRKSK
3	42	56	RRKSKGIEGVMRKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:16055682}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011099589.2	3e-84	homeobox-leucine zipper protein ATHB-40
Swissprot	Q9ZU70	9e-63	ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21
TrEMBL	A0A4D9A5N9	2e-93	A0A4D9A5N9_SALSN; Homeobox-leucine zipper protein
STRING	Solyc02g085630.2.1	7e-81	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1289	24	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	3e-45	homeobox protein 40

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] González-Grandío E, et al. Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254 [PMID:28028241]