PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00026861-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

bZIP

Protein Properties

Length: 413aa MW: 46521.4 Da PI: 8.6658

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00026861-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	44.3	3.8e-14	176	231	3	58
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 + kr rr+++NRe+ArrsR+RK+a + e e+ v +L eN +L k+ +++++++ SMil_00026861-RA_Salv 176 DAKRMRRMISNRESARRSRRRKQAHMSERETQVSQLRVENASLLKRFTDINQKYSE 231 68********************************************9999999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	9.8E-11	171	228	No hit	No description
SMART	SM00338	3.0E-16	174	238	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.875	176	231	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.3E-12	177	230	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.41E-9	178	228	No hit	No description
PROSITE pattern	PS00036	0	181	196	IPR004827	Basic-leucine zipper domain
Pfam	PF12498	3.7E-21	245	311	IPR020983	Basic leucine-zipper, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence Send to blast
MNRSASEWAF QRFLQEATSP DHNITTLPTD DVVKIKANHH HRNDNQQQPQ PAAAPQLNIR 60 IDPEEYQALL KSRLELACAA VALTRATNGK ALESDAAIAA DIGSQVSNSA SSKANGRDSS 120 KIQVEDFSEP VGVPTVLSIS TKSVAQVRST TSGSSGDQSD DDEAETEATQ NMDPADAKRM 180 RRMISNRESA RRSRRRKQAH MSERETQVSQ LRVENASLLK RFTDINQKYS ESAVDNRVLK 240 ADVETLRAKV KMAEESVKRV TGLNSLFHAM SEISTTGMQS FARSPETSAD AAVPIQDQRY 300 YQSPSNNHLT NLRIQNDEVR FCQRRMYHQT RLQPLGVTRW EEAFLCRDWV TWTICRITAV 360 KEQVPLVLEE LENSKASSKM VTVMLSAKLV LSYLRLCCFF VWKKTHSCLH FFV

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence Send to blast

MNRSASEWAF QRFLQEATSP DHNITTLPTD DVVKIKANHH HRNDNQQQPQ PAAAPQLNIR  60
IDPEEYQALL KSRLELACAA VALTRATNGK ALESDAAIAA DIGSQVSNSA SSKANGRDSS  120
KIQVEDFSEP VGVPTVLSIS TKSVAQVRST TSGSSGDQSD DDEAETEATQ NMDPADAKRM  180
RRMISNRESA RRSRRRKQAH MSERETQVSQ LRVENASLLK RFTDINQKYS ESAVDNRVLK  240
ADVETLRAKV KMAEESVKRV TGLNSLFHAM SEISTTGMQS FARSPETSAD AAVPIQDQRY  300
YQSPSNNHLT NLRIQNDEVR FCQRRMYHQT RLQPLGVTRW EEAFLCRDWV TWTICRITAV  360
KEQVPLVLEE LENSKASSKM VTVMLSAKLV LSYLRLCCFF VWKKTHSCLH FFV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	190	197	RRSRRRKQ
2	192	197	SRRRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011091948.1	1e-140	light-inducible protein CPRF2
Swissprot	Q99090	3e-82	CPRF2_PETCR; Light-inducible protein CPRF2
TrEMBL	A0A4D9BBH2	1e-149	A0A4D9BBH2_SALSN; Uncharacterized protein
STRING	Migut.N01912.1.p	1e-117	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2934	24	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28770.1	3e-52	bZIP family protein

Publications ? help Back to Top
Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness. EMBO J., 1991. 10(7): p. 1777-86 [PMID:2050115]