PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00026829-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 460aa    MW: 51183.3 Da    PI: 6.827
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00026829-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.12.5e-16299345354
                            HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            ++hn  ErrRRdriN++++ L+el+P++      K +Ka++L +A+eY+k+L
  SMil_00026829-RA_Salv 299 EMHNLSERRRRDRINQKMHALQELIPNC-----NKADKASMLDEAIEYVKNL 345
                            68*************************8.....6****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.11E-17292350No hitNo description
Gene3DG3DSA:4.10.280.103.4E-21293354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-20293358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.343296345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-13299345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-17302351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MPLYEFLRLA IEKLESSKQK PCSVDPSSKT ENELFARDGR SPTHLSLQPD TPSVCDDATL  60
GNCTTGRAGK FGGVEYIFND ISPELDSSRK DETAPWISYP KDDTLQDYSS FSAHPLLPSA  120
PSLLNCQDAR FWNSEEGRDL VESRNTELPV EEIVSAPRCS ATVKRVLIDQ LNITEKDVDL  180
HVPAAVNSRE LFVDERTKNI SLDTFMKTDK SLIQSNTIES TRPLDGKTTV EPIVASSFVS  240
SGNSGDRNFN EQKRYTKGKS HHNEDSECQS DELQNESVGL KKLSPAKGGS GSKRRRATEM  300
HNLSERRRRD RINQKMHALQ ELIPNCNKAD KASMLDEAIE YVKNLKHQVQ IMSMGYGSCV  360
APFMYYAAIP HSSYAGVRMG NMSGGSPQCP VFHAHFPTSV VNCPEFPSPI HGPRFFPLTK  420
SQQTLVTNHD QVPCMITNKI LSSKPRNEGP NQSPTARESN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1293308RRRATEMHNLSERRRR
2304309ERRRRD
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2575400.0KP257540.1 Salvia miltiorrhiza clone 107 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087568.11e-69transcription factor PIF3 isoform X3
RefseqXP_020552005.12e-69transcription factor PIF3 isoform X2
TrEMBLA0A0H3YC670.0A0A0H3YC67_SALMI; Basic helix-loop-helix transcription factor
STRINGVIT_14s0060g00260.t015e-55(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49652437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.27e-37phytochrome interacting factor 3