PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00026727-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

bHLH

Protein Properties

Length: 231aa MW: 25333.9 Da PI: 8.9008

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00026727-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	20.9	6.6e-07	181	207	4	30
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 +h+ +Er RR++i +++ L++l+P + SMil_00026727-RA_Salv 181 SHSLAERARREKISERMKILQDLVPGC 207 8************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.49E-8	175	210	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.06E-4	175	211	No hit	No description
PROSITE profile	PS50888	10.734	177	231	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.7E-8	180	211	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.8E-4	181	207	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MLIAAVGHLY AFPYKEYAGA NIGSNHGWSD SELFIICMLG VLEGICRLLL VDRHGSAPLW 60 QTCSIGNCNT CLAWPICMSE MMHRSNDDSR KRRDGDEHCA KGGGASTSSN NGGSCNTIYV 120 SNERRNEGDS KRMKAVGELK VEGEGNSGKG AAAVERRSKL DELPKQDYIH VRARRGQATD 180 SHSLAERARR EKISERMKIL QDLVPGCNKV RAAIKVKASV IICFTSSRKS C

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP257539	0.0	KP257539.1 Salvia miltiorrhiza clone 106 basic helix-loop-helix transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011071046.1	1e-41	transcription factor bHLH79-like
TrEMBL	A0A0H3YBV7	1e-170	A0A0H3YBV7_SALMI; Basic helix-loop-helix transcription factor
STRING	Migut.L01368.1.p	6e-39	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59640.1	1e-26	BIG PETAL P