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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00026708-RA_Salv | ||||||||
Common Name | MYB18 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | MYB | ||||||||
Protein Properties | Length: 197aa MW: 22456.9 Da PI: 9.8466 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.4 | 1e-15 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ ++ +G+g +W + + ++g++R++k+c++rw++yl SMil_00026708-RA_Salv 14 KGPWSPEEDAKLKSHIQNHGTGgNWIALPTKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 38.7 | 2.3e-12 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g++T+ Ed l+ ++ G++ W+ Ia+ ++ gRt++++k++w++ SMil_00026708-RA_Salv 69 GSFTENEDILICNLYVTIGSR-WSVIAAQLP-GRTDNDIKNYWNT 111 78*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.734 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.55E-26 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.5E-11 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.6E-15 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-23 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.57E-8 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 20.105 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 3.6E-10 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.6E-11 | 69 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.23E-7 | 70 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.3E-24 | 70 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MGRAPCCDKA KVKKGPWSPE EDAKLKSHIQ NHGTGGNWIA LPTKIGLKRC GKSCRLRWLN 60 YLRPNLKHGS FTENEDILIC NLYVTIGSRW SVIAAQLPGR TDNDIKNYWN TRLKKKLLGK 120 QRRSSPAANI PPLPLPPFHH AQQHHNVYSP IIHLPSISME NVISWEHMNY QPWMLFDDPS 180 LLPTLSPSLA CFNDEFS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-24 | 14 | 117 | 7 | 108 | B-MYB |
1h8a_C | 6e-24 | 11 | 117 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF059372 | 0.0 | KF059372.1 Salvia miltiorrhiza MYB-related transcription factor (MYB18) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027362138.1 | 2e-79 | transcription factor RAX3-like | ||||
Swissprot | Q9M2Y9 | 3e-76 | RAX3_ARATH; Transcription factor RAX3 | ||||
TrEMBL | A0A059PSL2 | 1e-145 | A0A059PSL2_SALMI; MYB-related transcription factor | ||||
STRING | XP_008778085.1 | 6e-78 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65790.1 | 2e-74 | myb domain protein 68 |
Publications ? help Back to Top | |||
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