PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

SMil_00026538-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

Dof

Protein Properties

Length: 239aa MW: 25114.1 Da PI: 4.6611

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00026538-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.6	1.6e-39	23	82	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++lkcprCds+ntkfCyynny+lsqPr+fC++C+ryWtkGGalrn+PvGgg+rkn k+s SMil_00026538-RA_Salv 23 QEQLKCPRCDSANTKFCYYNNYNLSQPRHFCRSCKRYWTKGGALRNIPVGGGSRKNSKRS 82 7899****************************************************9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.7E-33	24	80	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.124	26	80	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	3.0E-20	26	71	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	28	64	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MQNPSLYSQI QAQAQQQPQF PDQEQLKCPR CDSANTKFCY YNNYNLSQPR HFCRSCKRYW 60 TKGGALRNIP VGGGSRKNSK RSSSTSSSAD SAASKRPAVA ASPPPSASKD EKNSDRDKAR 120 EVFDTLPLRE ENFSGQFESL SFSSLLGSGG DQYVGLLDGL GPNGPDLEIN GHFDETGSGP 180 NANPALDGEG DEFLNLQGGV GGGGEGEGGG CDGGGWGGGG GGGGDWPDLS IYTPSSNFQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012856207.1	5e-67	PREDICTED: dof zinc finger protein DOF3.1
Swissprot	O82155	1e-42	DOF17_ARATH; Dof zinc finger protein DOF1.7
TrEMBL	A0A2G9GGT2	3e-71	A0A2G9GGT2_9LAMI; Uncharacterized protein
STRING	Migut.I01007.1.p	2e-66	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	6e-28	DOF zinc finger protein 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]