PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00026424-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | Trihelix | ||||||||
Protein Properties | Length: 247aa MW: 29017.2 Da PI: 5.3163 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 72.3 | 8.3e-23 | 32 | 102 | 1 | 71 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 +W+ +e+++ +++r +++ ++ ++k++k lWe vs +m + g++r+p+qCk+kw+nl +ryk ++++e+ + SMil_00026424-RA_Salv 32 QWSSEETRDFLAIRGDLDPTFMETKRNKLLWELVSTRMNQIGYNRTPIQCKCKWKNLVTRYKGCETMEEVE 102 7*****************************************************************99864 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd12203 | 2.51E-23 | 31 | 96 | No hit | No description |
Pfam | PF13837 | 4.8E-18 | 31 | 103 | No hit | No description |
SuperFamily | SSF46689 | 8.46E-5 | 32 | 103 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.282 | 33 | 89 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MYMDHSQFSQ VQNPYVGVSV ETGLGCGDRN PQWSSEETRD FLAIRGDLDP TFMETKRNKL 60 LWELVSTRMN QIGYNRTPIQ CKCKWKNLVT RYKGCETMEE VEMRERAFHL QEMQIIFNAR 120 MQRMMWQEVE GGAISPQMVS KAANSGCSSG NSSPVVDGLK EMMEEFMRQQ MELEMQWIKL 180 MRRERIGGER GEMDGGQRME ALESERLMMN SWWREREEER KMREEARAER RDALLTALLD 240 NLTRGAI |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024968667.1 | 5e-76 | trihelix transcription factor GT-3b | ||||
TrEMBL | A0A2Z7B1Q6 | 7e-80 | A0A2Z7B1Q6_9LAMI; Trihelix transcription factor GT-3b | ||||
STRING | XP_010264622.1 | 7e-71 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4187 | 23 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38250.1 | 5e-42 | Trihelix family protein |