PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00026399-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

MYB

Protein Properties

Length: 276aa MW: 31036.8 Da PI: 6.6816

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00026399-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.9	2e-07	41	86	3	46
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 W eE + + +a ++l +++Ia++++ R+ +++k+++q SMil_00026399-RA_Salv 41 EWNSEENKVFENALAELDHSsptFFESIASKVP-WRSIEDIKLHYQA 86 6***************99*********.*********95 PP
2	Myb_DNA-binding	45	2.4e-14	130	174	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + +++G+g+W++I+r+ ++t+ q+ s+ qky SMil_00026399-RA_Salv 130 PWTEEEHQLFLMGLNKYGKGDWRSISRYYVITKTPTQVASHAQKY 174 7***************************889*********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	6.8E-5	38	90	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	8.61E-7	40	93	IPR009057	Homeodomain-like
CDD	cd00167	3.67E-4	41	88	No hit	No description
PROSITE profile	PS50090	4.716	42	88	IPR017877	Myb-like domain
PROSITE profile	PS51294	19.317	122	179	IPR017930	Myb domain
SuperFamily	SSF46689	9.33E-17	124	179	IPR009057	Homeodomain-like
SMART	SM00717	8.2E-12	127	177	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	1.2E-16	128	178	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	7.6E-11	130	176	IPR009057	Homeodomain-like
CDD	cd00167	7.04E-11	130	175	No hit	No description
Pfam	PF00249	5.4E-13	130	174	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MEWPADFHCS PLDESLYSLL SPSPPPPPPP SLSEMPKPSR EWNSEENKVF ENALAELDHS 60 SPTFFESIAS KVPWRSIEDI KLHYQALVQD IEMIESGNFP IPDYPTLDLQ PKPDDDSKNK 120 TGPPRRRGIP WTEEEHQLFL MGLNKYGKGD WRSISRYYVI TKTPTQVASH AQKYFRRQTS 180 STPADRRRPS IHDIHTVSPA AAAFASPSLP NPIPFPPSAL IPALHQNYPN LAQNPSFLQQ 240 PPLNAAPAHA MFNQAAHPSS SSSSFLQPQL RNNFWG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	4e-14	39	115	8	84	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011098014.1	1e-104	transcription factor SRM1-like
Swissprot	Q8S9H7	4e-51	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	A0A4D9BUN9	4e-95	A0A4D9BUN9_SALSN; Uncharacterized protein
STRING	Migut.L00854.1.p	5e-92	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5234	20	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58900.1	2e-49	Homeodomain-like transcriptional regulator

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]