PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00026352-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB_related
Protein Properties Length: 77aa    MW: 9083.55 Da    PI: 10.3812
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00026352-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.93.5e-11947147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                           +g+WT+eEd ll d+v+++G g W++++ + g         +rw++y
  SMil_00026352-RA_Salv  9 KGAWTKEEDALLRDCVHKYGEGKWHLVPLRAG--------ALRWLNY 47
                           79**************************9999........4555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.714452IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.5E-13451IPR009057Homeodomain-like
SMARTSM007171.5E-7850IPR001005SANT/Myb domain
PfamPF002496.1E-9943IPR001005SANT/Myb domain
SuperFamilySSF466895.45E-161076IPR009057Homeodomain-like
CDDcd001671.59E-61148No hitNo description
Gene3DG3DSA:1.10.10.601.9E-55275IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 77 aa     Download sequence    Send to blast
MENSNDVRKG AWTKEEDALL RDCVHKYGEG KWHLVPLRAG ALRWLNYLRP NINRGFFTKI  60
EIDLIVRLHK LLGNRQV
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025015695.19e-32transcription factor MYB113
SwissprotQ9FNV96e-27MY113_ARATH; Transcription factor MYB113
TrEMBLA0A2G9FVK61e-31A0A2G9FVK6_9LAMI; Uncharacterized protein
TrEMBLK4NRU81e-31K4NRU8_SCUBA; Uncharacterized protein (Fragment)
STRINGXP_002534011.12e-30(Ricinus communis)
STRINGMigut.H00279.1.p5e-32(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.13e-29myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]