PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00026336-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | bHLH | ||||||||
Protein Properties | Length: 196aa MW: 22041 Da PI: 8.4816 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29 | 2e-09 | 53 | 104 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 +++ah Er+RR+++ ++ Lr+llP ++K ++ +Av+Y++++ SMil_00026336-RA_Salv 53 KKTAHRFTERQRRQEMSGLYASLRSLLPLqY---VKGKRAVSDHMHQAVNYVNDM 104 799**************************66...9999999**********9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.32E-12 | 49 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.827 | 52 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.40E-8 | 52 | 109 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.9E-9 | 53 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.6E-6 | 53 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MLPISSDGVS EDPSIFLELE DLLADCPIPD GNQNTVKKSS ASSQVEENNQ DSKKTAHRFT 60 ERQRRQEMSG LYASLRSLLP LQYVKGKRAV SDHMHQAVNY VNDMKKNIEQ LQKRRDKLRN 120 ITTSADPTTN AGDSPRCVKI NLFKDGMEIL ITHSLSNKSF PLSKVLAYLL DRQLNVVHCV 180 STTTAPSTFL QTIHIE |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP257535 | 0.0 | KP257535.1 Salvia miltiorrhiza clone 102 basic helix-loop-helix transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011076269.1 | 3e-61 | transcription factor bHLH36-like | ||||
TrEMBL | A0A0H3YC65 | 1e-143 | A0A0H3YC65_SALMI; Basic helix-loop-helix transcription factor | ||||
STRING | Migut.F01201.1.p | 3e-42 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA598 | 24 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25410.1 | 7e-29 | bHLH family protein |