PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00026117-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | CO-like | ||||||||
Protein Properties | Length: 361aa MW: 40613.4 Da PI: 5.9764 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 24 | 8.3e-08 | 18 | 60 | 3 | 39 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 r C+ ++e ++ l+C+ ++ lC +C e H+ H++ SMil_00026117-RA_Salv 18 DRLCDFCNESKALLYCRADSAKLCFSCDREVHSTnplfkkHNR 60 689******99*********************66777777776 PP | |||||||
2 | zf-B_box | 24.7 | 4.7e-08 | 61 | 104 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg....Htvvpl 42 C+ +++ + ++fC + + lC++C e+H++ H+++pl SMil_00026117-RA_Salv 61 SLLCNSCSSSPSSIFCCTESAVLCQNCDWEIHNSfgsiHDRRPL 104 568*****************************889999999876 PP | |||||||
3 | CCT | 58.3 | 2.7e-20 | 317 | 360 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R+ al+RYkeK+ktR+++K++rYesRK++AesR R+KGrF+k++ SMil_00026117-RA_Salv 317 RDSALSRYKEKKKTRRYDKHVRYESRKVRAESRMRIKGRFAKKD 360 899**************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.765 | 16 | 63 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.9E-14 | 16 | 63 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.7E-6 | 18 | 60 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.68E-7 | 19 | 50 | No hit | No description |
PROSITE profile | PS50119 | 9.911 | 59 | 104 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.2E-5 | 61 | 103 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 0.19 | 64 | 104 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 14.723 | 317 | 359 | IPR010402 | CCT domain |
Pfam | PF06203 | 8.0E-16 | 317 | 359 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MSEAELDMHN SVSRDQSDRL CDFCNESKAL LYCRADSAKL CFSCDREVHS TNPLFKKHNR 60 SLLCNSCSSS PSSIFCCTES AVLCQNCDWE IHNSFGSIHD RRPLEGFTGC PSVTELLGFL 120 GLQDLGKKSL DLGGGNDEEF LDMLVWETPS VVSLDDLIVA NDYDHSAPAF QATGVPPLPK 180 NRNASCGKHK EEIFFQLHKM AKKDPNYSGS LEDFVENNQP QVTAKCVKAS PCLQHKEEPV 240 QLPSYEDSNV DWCFGGGVQD EGFPSTYFGD FSEMSHLVPD KDSDTGFQEI QAFVPADSKA 300 FQPLPTAAAR ELNSQERDSA LSRYKEKKKT RRYDKHVRYE SRKVRAESRM RIKGRFAKKD 360 R |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011079734.1 | 0.0 | zinc finger protein CONSTANS-LIKE 13 | ||||
TrEMBL | A0A4D8ZT28 | 0.0 | A0A4D8ZT28_SALSN; Uncharacterized protein | ||||
STRING | Migut.D00173.1.p | 1e-168 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7362 | 22 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47890.1 | 1e-76 | B-box type zinc finger protein with CCT domain |