PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00026032-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

bZIP

Protein Properties

Length: 417aa MW: 46641.4 Da PI: 7.4803

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00026032-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.1	5.2e-10	148	183	3	38
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeL 38 + k ++++NReAArrsR RKka+i++Le + + SMil_00026032-RA_Salv 148 DQKELVKLAQNREAARRSRMRKKAYIQQLESNQQRI 183 568889************************876655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50217	8.634	148	194	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.5E-7	150	183	No hit	No description
Pfam	PF00170	1.9E-6	150	182	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.9E-7	152	179	No hit	No description
PROSITE pattern	PS00036	0	154	168	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	3.0E-26	217	290	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence Send to blast
MHSFFNFDTQ SPCYLRDIDK NGVDFAELLQ SAENGNHRAD SADISRIFSM YNGMKASNVS 60 AVSSSSLQFG GVPNSLGSAE TQSSELISGG GGAVGKRQFE KWGDSADHIH HSHKLQTSTD 120 NELAGVHHQR LISEDPTDQS KFKGRFRDQK ELVKLAQNRE AARRSRMRKK AYIQQLESNQ 180 QRIIQLDQAL ERALVAGRGV FDADHARWLV EHERLTDDLR SSLSSGKGDN ELHLLVDAVV 240 SHYDDLYRIK SAGVRSDMFH ILSGAWRTPV ERCLMWLGGF RSSDLLKVLE KQIQPLTEQQ 300 LVGICNLQQS CQQTEDALSQ GMEALQQSVL HTLSSTSLAR RSAGNVVDYA SHMATAMSNI 360 QTIEDFLNQA DLLRLHTLQQ LQRILSPCQA ARALLAINDY KSRLRALSSL WLARPKE

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence Send to blast

MHSFFNFDTQ SPCYLRDIDK NGVDFAELLQ SAENGNHRAD SADISRIFSM YNGMKASNVS  60
AVSSSSLQFG GVPNSLGSAE TQSSELISGG GGAVGKRQFE KWGDSADHIH HSHKLQTSTD  120
NELAGVHHQR LISEDPTDQS KFKGRFRDQK ELVKLAQNRE AARRSRMRKK AYIQQLESNQ  180
QRIIQLDQAL ERALVAGRGV FDADHARWLV EHERLTDDLR SSLSSGKGDN ELHLLVDAVV  240
SHYDDLYRIK SAGVRSDMFH ILSGAWRTPV ERCLMWLGGF RSSDLLKVLE KQIQPLTEQQ  300
LVGICNLQQS CQQTEDALSQ GMEALQQSVL HTLSSTSLAR RSAGNVVDYA SHMATAMSNI  360
QTIEDFLNQA DLLRLHTLQQ LQRILSPCQA ARALLAINDY KSRLRALSSL WLARPKE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in the determination of floral organ number. Acts to determine floral organ patterning by establishing floral organ primordia in specific numbers and positions. Plays a role in regulating stem cell fate by directly controlling AG expression. Binds to the 5'-AAGAAT-3' cis-acting element found in AG promoter. Might represent a target for a post-translational modification by GRXC7/ROXY1. {ECO:0000269\|PubMed:19395638, ECO:0000269\|PubMed:19395639, ECO:0000269\|PubMed:9990857}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011077152.1	1e-150	transcription factor HBP-1b(c38)-like
Swissprot	Q9SX27	1e-113	PAN_ARATH; Transcription factor PERIANTHIA
TrEMBL	A0A4D9A4X8	1e-147	A0A4D9A4X8_SALSN; Transcription factor TGA
STRING	VIT_01s0011g03230.t01	1e-132	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68640.1	4e-94	bZIP family protein

Publications ? help Back to Top
Maier AT,Stehling-Sun S,Offenburger SL,Lohmann JU The bZIP Transcription Factor PERIANTHIA: A Multifunctional Hub for Meristem Control. Front Plant Sci, 2011. 2: p. 79 [PMID:22645551] Chandler JW,Werr W Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation. J. Exp. Bot., 2014. 65(12): p. 3097-110 [PMID:24744428] Wynn AN,Seaman AA,Jones AL,Franks RG Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development. Front Plant Sci, 2014. 5: p. 130 [PMID:24778638] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] de Luis Balaguer MA, et al. Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(36): p. E7632-E7640 [PMID:28827319]