PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00025995-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family NAC
Protein Properties Length: 538aa    MW: 59748.7 Da    PI: 4.1782
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00025995-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1042e-321199188
                    NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88
                           lp+G+rF+Ptdeel+++yL+ k+++++ e+ +vi+e+d++k+ePwdLp  + v+++++ew+fF+++d+ky++g+r nrat++gyWkat +
  SMil_00025995-RA_Salv 11 LPVGYRFRPTDEELIDHYLRLKINRRDKEV-SVIREIDVCKWEPWDLPdlSVVESTDNEWFFFCPKDRKYQNGQRLNRATEKGYWKATVE 99
                           799************************999.99**************96447888999*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-333100IPR003441NAC domain
PROSITE profilePS5100528.05911164IPR003441NAC domain
PfamPF023658.4E-151299IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
LSMAVLPVKA LPVGYRFRPT DEELIDHYLR LKINRRDKEV SVIREIDVCK WEPWDLPDLS  60
VVESTDNEWF FFCPKDRKYQ NGQRLNRATE KGYWKATVEE IIASPPEVRS VEDEQSEQVS  120
PSLGGMVEPR PASVESHQTL STQKAADSTP IPLDWHSNSG IADEMEDNVL DIKSIPPNPE  180
LEKLLNEFCY PEQQTTDGKM FSPLHSQMQS ELGNPYFYGN FNDDISDNQQ TIPFQYGTNP  240
ADDIEKFLNS VFVDPEGQIS RLEKDSNSCS ESEGEVSQRQ GDLFMLPVES FEDNIKQESP  300
FQSEVSSEMP AVDQDGHSSY VSSSLDQGNL VYATNFFGFP NDFTTDSSGN YIGHMSNVEN  360
TGLYSPAVED TTSGTGIVIR KRQIPNQSTV QNTALHGTAP RRLRLQMKLQ VGPVQCGLPN  420
EQTNSKIEQE SNTAQDDEKA ASVSAHESGA STSVDANSDG NSNDTTTYPE VKAESPYSKS  480
EDTLSQRSGC ALSVSSLRYM PKVLMAMSVY AAFLVDVFLD DGGYILPSQF DVNSGSLT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-241110515107Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011075874.11e-133NAC domain-containing protein 62
TrEMBLA0A4D8ZWX50.0A0A4D8ZWX5_SALSN; Uncharacterized protein
STRINGMigut.F00136.1.p1e-102(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33632448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.15e-45NAC 014