PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00025971-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 218aa MW: 24446 Da PI: 6.8909 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 59.2 | 5.2e-19 | 19 | 67 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ie k+ qv fskRr g++ KA+EL vLC+aeva+++ s+ +kl+ + SMil_00025971-RA_Salv 19 KKIEKKTSLQVAFSKRRGGLFRKASELAVLCGAEVAILVQSPADKLFAF 67 68********************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 5.62E-25 | 11 | 80 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 25.315 | 11 | 71 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 6.7E-30 | 11 | 70 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-18 | 13 | 33 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.8E-21 | 20 | 67 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-18 | 33 | 48 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-18 | 48 | 69 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MEKPNNGKKT MGRRKIEIKK IEKKTSLQVA FSKRRGGLFR KASELAVLCG AEVAILVQSP 60 ADKLFAFGHP SVGALIDRVS PSPAAAAPPQ IALRRADDGR IKCEEAVKML EMERRRAAEK 120 EITGGFWWER PHEGMELHEL EEFLKALEDF GDKVAERVEE FQKLMMKNST PPLMHAPIAA 180 ANNGGYEDDL IYFHQNMHAP ITAPSNGDDD IYFHLSDF |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011096574.1 | 5e-50 | agamous-like MADS-box protein AGL23 | ||||
STRING | Migut.H00739.1.p | 3e-42 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13821 | 4 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 1e-27 | AGAMOUS-like 62 |