PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

SMil_00025808-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

bHLH

Protein Properties

Length: 297aa MW: 33315.8 Da PI: 7.3887

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00025808-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.5	5.9e-14	85	136	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P + + ++ + a+i+ A+e++k+L+ SMil_00025808-RA_Salv 85 QRMTHIAVERNRRKQMNEHLAVLRSLMPDS---YVQRGDQASIVGGAIEFVKELE 136 79**************************...9****************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.8E-13	83	138	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.09E-16	83	152	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.68E-12	83	140	No hit	No description
PROSITE profile	PS50888	15.123	84	135	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.9E-11	85	136	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.5E-10	90	141	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MTMEALSSSE LLNFIMYDTN VSAPLSCNNN DSSEASPREI GSCSSRPRPT HPPPPAETAS 60 VALQGRKKRR RRPKVCKNKE EAETQRMTHI AVERNRRKQM NEHLAVLRSL MPDSYVQRGD 120 QASIVGGAIE FVKELEHILQ SLEAKKFALL EHGNVTNKEH HDDEEIRNDD RNLGSPFAQF 180 FAYPQFSCSH SQVSNKYTSQ SKAAIADIEV TLIETHANIR VLSRRRVRQL SKMVASFQSI 240 FLAILHLNVT TLDTLVLYSI SAKVEEGCQL NSADDIAGAV HHMLRIIEEE AILGCHT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	65	71	RKKRRRR
2	66	71	KKRRRR
3	85	96	RMTHIAVERNRR

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP257527	0.0	KP257527.1 Salvia miltiorrhiza clone 94 basic helix-loop-helix transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011070274.1	1e-147	transcription factor bHLH71
Swissprot	Q9C7T4	5e-76	BH096_ARATH; Transcription factor bHLH96
TrEMBL	A0A0H3YB55	0.0	A0A0H3YB55_SALMI; Basic helix-loop-helix transcription factor
STRING	Migut.O00536.1.p	1e-136	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5632	24	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	7e-68	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]