PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00025652-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

SRS

Protein Properties

Length: 335aa MW: 35746.5 Da PI: 6.7341

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00025652-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	228.6	1.1e-70	106	260	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa......aeaaskrkrelkskkqs 84 g++sCqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpaakrre+qqqlaa+++++++ + ++++ kr+re + ++++ SMil_00025652-RA_Salv 106 GGGISCQDCGNQAKKDCSHMRCRTCCKSRGFQCQTHVKSTWVPAAKRREKQQQLAALQQRQESGSgrerdrERESGKRQRE-NPSSSN 192 5789**************************************************9998887776666644444555555.477778 PP DUF702 85 alsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +l +t+++++++ le ++P+evs+eavfrcvrvs++dd+e+++aYqtav+i+GhvfkGiLydqG+e+ SMil_00025652-RA_Salv 193 SLVCTRIPTSTT--GLELGNFPSEVSAEAVFRCVRVSAIDDAEDQYAYQTAVNISGHVFKGILYDQGTET 260 888888888765..588899*********************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	3.6E-67	108	259	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.4E-27	110	152	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.2E-28	211	257	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009938	Biological Process	negative regulation of gibberellic acid mediated signaling pathway
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MAGFFSLGGG RGGANPDQEG ANPDINPESW FLYRNEEIPS YRGFELWQPQ PPPQQQAENF 60 LQRPLQDLYA SAGGLAVGPS RGGGFSITEE SPRSGFLMMR SGGGGGGGIS CQDCGNQAKK 120 DCSHMRCRTC CKSRGFQCQT HVKSTWVPAA KRREKQQQLA ALQQRQESGS GRERDRERES 180 GKRQRENPSS SNSLVCTRIP TSTTGLELGN FPSEVSAEAV FRCVRVSAID DAEDQYAYQT 240 AVNISGHVFK GILYDQGTET QYMAAGETSS GGGSVSVGVQ QLNLIAGTSA AAATSTADTS 300 APAAATSSPY LDPSLYPAPL NSFMAGTQFF PPPRS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269\|PubMed:24142382, ECO:0000269\|PubMed:24884371}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011100954.1	1e-150	protein SHORT INTERNODES
Swissprot	K4B6C9	1e-107	EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
TrEMBL	A0A4D9AWL5	1e-158	A0A4D9AWL5_SALSN; Uncharacterized protein
STRING	EOX90942	1e-120	(Theobroma cacao)
STRING	Migut.L00031.1.p	1e-120	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA678	24	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	3e-81	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]