PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00025556-RA_Salv | ||||||||
Common Name | WRI5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | AP2 | ||||||||
Protein Properties | Length: 289aa MW: 32776.1 Da PI: 5.9979 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 36 | 1.8e-11 | 46 | 101 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 ++GV++++++gr++A+++d ++n ++k+ + g + +e Aa+a++ a++k++g SMil_00025556-RA_Salv 46 IHRGVTRHRWTGRFEAHLWDkDCWNEsQNKKGRQGAYNDEEAAARAYDLAALKYWG 101 68******************99998898877777999998**************98 PP | |||||||
2 | AP2 | 43.8 | 6.3e-14 | 132 | 179 | 6 | 56 |
AP2 6 VrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 r+++ +grW+A+I + g +k+ +lg++ t eeAa+a++ a+ k++g+ SMil_00025556-RA_Salv 132 LRRHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAAAYDMAAIKYRGN 179 5899*********99966...3.6**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.35E-14 | 45 | 110 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 9.7E-20 | 46 | 115 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.7E-8 | 46 | 101 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.097 | 46 | 109 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.3E-6 | 47 | 58 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-11 | 47 | 109 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.949 | 127 | 186 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.3E-10 | 130 | 178 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-20 | 134 | 192 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-15 | 134 | 188 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.60E-12 | 134 | 188 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.7E-15 | 134 | 187 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.3E-6 | 168 | 188 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MARSSKQKNR PLAAASAAEI SDNDRREGKR KRKSAPRESP QQRSSIHRGV TRHRWTGRFE 60 AHLWDKDCWN ESQNKKGRQG AYNDEEAAAR AYDLAALKYW GQDTTLNFPL PTYQKELQEM 120 EGQSKEEYIS SLRRHHHNGR WEARIGRVFG NKYLYLGTYA TQEEAAAAYD MAAIKYRGNN 180 AVTNFDLSRY INCNMDDNSP IARESPTAAE AEAAASPPLP IGSGGEALGL LLQSSKFKEM 240 MEPNPPRSSF PDDIQTSFDF QDSSTYADEN DIIFSDYDFL SMFQCGLDE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 24 | 30 | RREGKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ784456 | 0.0 | KJ784456.1 Salvia miltiorrhiza AP5/EREBP Transcription Factors (WRI5) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024448435.1 | 1e-123 | AP2-like ethylene-responsive transcription factor At1g16060 | ||||
Refseq | XP_024452992.1 | 1e-123 | AP2-like ethylene-responsive transcription factor At1g16060 | ||||
Refseq | XP_028051280.1 | 1e-123 | AP2-like ethylene-responsive transcription factor At1g16060 isoform X1 | ||||
Refseq | XP_028051281.1 | 1e-123 | AP2-like ethylene-responsive transcription factor At1g16060 isoform X2 | ||||
Swissprot | Q94AN4 | 1e-84 | AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | A0A0G2SJH2 | 0.0 | A0A0G2SJH2_SALMI; AP5/EREBP Transcription Factors | ||||
STRING | cassava4.1_025233m | 1e-120 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1815 | 24 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79700.2 | 1e-79 | AP2 family protein |
Publications ? help Back to Top | |||
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