PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00025403-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ZF-HD
Protein Properties Length: 337aa    MW: 36481.6 Da    PI: 8.1687
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00025403-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer109.51.9e-3451107358
            ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 
                             v+YkeClkNhAa+lGghavDGCgEfmps+ ++ +++++lkCaACgCHRnFHRr++e
  SMil_00025403-RA_Salv  51 VVTYKECLKNHAATLGGHAVDGCGEFMPSPASNpAEPTSLKCAACGCHRNFHRRDPE 107
                            589****************************999********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.1E-2852106IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.7E-3053105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.34854105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-2254104IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.08E-17189260IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-28191261IPR009057Homeodomain-like
TIGRFAMsTIGR015653.3E-24199256IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MDLGNSSVKT PEAESETPTR IQPTTKSASA FTNGVLKRHA PLQHFHHHPV VVTYKECLKN  60
HAATLGGHAV DGCGEFMPSP ASNPAEPTSL KCAACGCHRN FHRRDPEDPL PVPPAATPAL  120
EYQPHHRHHP PPPRAGGGNS PNNSPSPPPI SSSYYPSAPH MLLALSHGLS APPPDSNHHS  180
PISAAINPGS TPMLSSSSRK RYRTKFTQFQ KEKMLEFAEK VEWKMQKRDE DAINSFCGEI  240
GVDKGVFKVW MHNNKNTFGK KDHPPPPHLS NSNTTTEIST PPPANGNGNG LSYCNIKEDV  300
HATEELGHQL HLHDNRSSHA HAHAHAHALG TNGSSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-201982571675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00387DAPTransfer from AT3G28920Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011085755.11e-125zinc-finger homeodomain protein 9
SwissprotQ9LHF06e-69ZHD9_ARATH; Zinc-finger homeodomain protein 9
TrEMBLA0A2G9HG831e-131A0A2G9HG83_9LAMI; Uncharacterized protein
STRINGevm.model.supercontig_140.557e-98(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10882485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.15e-62homeobox protein 34
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]