PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00025348-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 255aa MW: 27799.7 Da PI: 9.6552 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 73.5 | 1.7e-23 | 27 | 73 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 en+sn qvtfskRr+g++KKA+EL++LC+ae+a+++fs+ +k+y + SMil_00025348-RA_Salv 27 MENHSNLQVTFSKRRAGLFKKASELCTLCGAEAAIVVFSPANKVYCF 73 79******************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 6.9E-32 | 17 | 76 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 23.941 | 17 | 77 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.09E-25 | 18 | 86 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.41E-31 | 18 | 84 | No hit | No description |
PRINTS | PR00404 | 4.4E-18 | 19 | 39 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.9E-24 | 26 | 73 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.4E-18 | 39 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.4E-18 | 54 | 75 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MSSSSKQAAG AAPRKSKGRQ KVKMAKMENH SNLQVTFSKR RAGLFKKASE LCTLCGAEAA 60 IVVFSPANKV YCFGHPNVNT LVDRLAAGME PPPPPSHLIM EAHRNSNIRD LNIELTRLDT 120 LLRAERRRAQ EIDLLRRAGH QQRSLDDLDH AQLCALKESV MEFKKSLDAK LHKEMFSGVG 180 AGADDTCRFP GFDLPKLSLG FGHLLPYSNG GLPADYSTVN INGGGGAYYG WSNGASSSTL 240 PNDPHAIATN MFQMF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011088154.2 | 8e-70 | agamous-like MADS-box protein AGL62 | ||||
Swissprot | Q9FKK2 | 2e-42 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A4D9BG53 | 8e-89 | A0A4D9BG53_SALSN; MADS-box transcription factor, plant | ||||
STRING | Migut.B00479.1.p | 2e-61 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA204 | 24 | 223 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 7e-45 | AGAMOUS-like 62 |
Publications ? help Back to Top | |||
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