PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00025062-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family HD-ZIP
Protein Properties Length: 471aa    MW: 53516.7 Da    PI: 7.7541
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00025062-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.51.2e-18301353456
                            -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                            + ++++eqle Le  F+++ +++ +++ +LAk+lgL+ rq+ +WFqNrRa++k
  SMil_00025062-RA_Salv 301 KKRLSNEQLELLEISFQEEIKLDPDRKMKLAKELGLQPRQIAIWFQNRRARWK 353
                            5569************************************************9 PP
2HD-ZIP_I/II119.91.4e-38300390292
            HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                            kk+rls+eq++lLE sF+ee kL+p+rK++la+eLglqprq+a+WFqnrRAR+k kqlE+ y+aLk++yda+++++++L++ev +Lr+
  SMil_00025062-RA_Salv 300 KKKRLSNEQLELLEISFQEEIKLDPDRKMKLAKELGLQPRQIAIWFQNRRARWKGKQLERLYDALKQEYDAVSRDKQKLQQEVMALRA 387
                            9**************************************************************************************8 PP

            HD-ZIP_I/II  90 elk 92 
                             lk
  SMil_00025062-RA_Salv 388 ILK 390
                            876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.13E-18288356IPR009057Homeodomain-like
SMARTSM003894.0E-18298359IPR001356Homeobox domain
CDDcd000868.24E-17300356No hitNo description
PROSITE profilePS5007116.358300355IPR001356Homeobox domain
PfamPF000467.5E-16301353IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.9E-20302362IPR009057Homeodomain-like
PRINTSPR000312.0E-5326335IPR000047Helix-turn-helix motif
PROSITE patternPS000270330353IPR017970Homeobox, conserved site
PRINTSPR000312.0E-5335351IPR000047Helix-turn-helix motif
PfamPF021834.0E-8355389IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010434Biological Processbract formation
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MYKNSKAHGV DKLTCGLASG LDLSTSLART HTRAPPPTID RSIDRTDDDV AAGRAGRVGS  60
PELAGLWCYI QRDEVVLPLG KIRLTEEHYR GDNLLAGRDS SRLDLKIIFS AVDTRSRNGS  120
HRRQYGWLHH LCNHRFNHVV NIFLVCINGA SSSTSRTIGL AEKPSTFSGK NFKYWQEKML  180
FYLTTVGFAG FLMEDKPPTP SEGEGETSQE IRAGYLNWCR GDYLCRNTVL MSLDERLYRV  240
FKHIMDWNGN LRMPFVSRPA DTSNFNFLYN CATFDHFPEM KQQSETMMEK SMNNLGVDPK  300
KKRLSNEQLE LLEISFQEEI KLDPDRKMKL AKELGLQPRQ IAIWFQNRRA RWKGKQLERL  360
YDALKQEYDA VSRDKQKLQQ EVMALRAILK DQVGKNQVST GYTDISGEET VESTSIPSSD  420
PTATATAAEE AMTAAASLHQ MAECNYPMNM EDYNNTVMIA PYWATSMPSC P
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1347355RRARWKGKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00486DAPTransfer from AT5G03790Download
Motif logo
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38692246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.18e-48homeobox 51