PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00025013-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | FAR1 | ||||||||
Protein Properties | Length: 705aa MW: 79638.2 Da PI: 9.0835 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 26.8 | 1.8e-08 | 177 | 230 | 39 | 90 |
FAR1 39 gkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 gk+e++ ++ ++++rr++++tr C+a++ + + g++ ++++++ HnH+l SMil_00025013-RA_Salv 177 GKNEKHPENqpKTTKRRRKPSTRNACRARVITRILDGGEFIISRFDEVHNHKLI 230 55555444455789999***********************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 6.6E-6 | 177 | 230 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.8E-8 | 352 | 404 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.804 | 517 | 553 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 4.8E-4 | 523 | 545 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 0.0037 | 528 | 555 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 705 aa Download sequence Send to blast |
MGEERNRIYL RLVDDRGGAR LFPVSPAVAV VGEDGCDGGG SLCCPIPSKG SREVGQPSLG 60 PFGRREREAS KRRRQRTAEA ERGSIFPAGD EGRPREREAA LAGGGAAISQ RGGADVREGK 120 RESVVCAECA ENNHVQANNF TSYLPICDDS LKPYVGQTFN SVDDAFDFYA LEGINPGKNE 180 KHPENQPKTT KRRRKPSTRN ACRARVITRI LDGGEFIISR FDEVHNHKLI SPDCRHLMKY 240 NRKVDASHHM VMLKCAKANI GPMRAFRLFK ELVGKYEDVG CTSNDFKNLS YQMNSYTEGS 300 DAQLLLERLI TKRDTDDQFK CEYLLDECHK VKSIFWSDAV GVHNYKVFGD SVSFDATYTT 360 NRYDMIFAPF TGKDNHGGCV TFAAGLLTRE DIPAYFRDLR MSGLFRTTSM SESENSFFRK 420 YLNRHSNLAA FYIHYESAMQ AQRHSYKQLC MTDQTTTPKL KTNKPIEQHA SRIYTSKIFL 480 EVQVEIVEAF NRCRIRSMDT GHEEHRYAVD DRSSGVFNVA HNTLSNTIDC SCKHFLKKGL 540 VCRHMFVVMH NIGLNAIPQK YILGRWMQNA GVGVMSNTQT QTSNKPLMSE AFRCIAIVDG 600 NEALSASLIA ELKRWADANQ PQSSTSVNAK ERMFQTFYGA KLPTKITIHP PDHVKTKGSG 660 KRLKSTYEKE LEKAKKPRRR CQKCGFMVRH DSRNCGKVVE EDSEE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 64 | 73 | REREASKRRR |
2 | 186 | 192 | PKTTKRR |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3136 | 2 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 7e-25 | FAR1-related sequence 5 |