PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00024865-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

G2-like

Protein Properties

Length: 366aa MW: 40942.2 Da PI: 8.9288

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00024865-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.2	1.6e-32	70	124	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wt +LHerF+eav+qLGG+ekAtPk++l+lm+++gLtl+h+kSHLQkYRl SMil_00024865-RA_Salv 70 KPRLKWTLDLHERFIEAVNQLGGAEKATPKSVLKLMGIPGLTLYHLKSHLQKYRL 124 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.413	67	127	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.5E-30	68	125	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.78E-16	69	125	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.6E-23	70	125	IPR006447	Myb domain, plants
Pfam	PF00249	1.6E-9	72	123	IPR001005	SANT/Myb domain
Pfam	PF14379	5.7E-23	167	212	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
LLHYKYAKIK SITQPATLLA LNHHHIKDMY QRRHHQEKNV HPIPPERHMF LQGVNGAGGD 60 SGLVLSSDAK PRLKWTLDLH ERFIEAVNQL GGAEKATPKS VLKLMGIPGL TLYHLKSHLQ 120 KYRLSKNLHQ QANNGSNKAS KAERVAEVNG PLMSNQNISN QATRNLQLDE AIQMQIEVQQ 180 RLHEQLEVQR HLQMRIEAQG KYLQSVLEKA QESLGRQNAG TLGLEAAKHQ LSELVSQVSN 240 QCLNSAFSRI NDLCVQQPKD CSGDSCLTSC EAYDNPLGLK PRWQHDNLKE CGKYVSRDAF 300 VAEANPNSLS ISIGLQSPKG EGADNNKSSS ESKLPFFPTK LDLNTNYEKD VASSYKQLDL 360 NGFSWS

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

LLHYKYAKIK SITQPATLLA LNHHHIKDMY QRRHHQEKNV HPIPPERHMF LQGVNGAGGD  60
SGLVLSSDAK PRLKWTLDLH ERFIEAVNQL GGAEKATPKS VLKLMGIPGL TLYHLKSHLQ  120
KYRLSKNLHQ QANNGSNKAS KAERVAEVNG PLMSNQNISN QATRNLQLDE AIQMQIEVQQ  180
RLHEQLEVQR HLQMRIEAQG KYLQSVLEKA QESLGRQNAG TLGLEAAKHQ LSELVSQVSN  240
QCLNSAFSRI NDLCVQQPKD CSGDSCLTSC EAYDNPLGLK PRWQHDNLKE CGKYVSRDAF  300
VAEANPNSLS ISIGLQSPKG EGADNNKSSS ESKLPFFPTK LDLNTNYEKD VASSYKQLDL  360
NGFSWS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-20	69	126	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-20	69	126	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-20	70	126	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-20	70	126	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-20	70	126	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-20	70	126	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-20	69	126	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-20	69	126	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-20	69	126	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-20	69	126	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-20	69	126	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-20	69	126	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011077862.1	1e-145	myb-related protein 2 isoform X1
Swissprot	Q9SQQ9	1e-107	PHL9_ARATH; Myb-related protein 2
TrEMBL	A0A4D8Z4H9	0.0	A0A4D8Z4H9_SALSN; Uncharacterized protein
STRING	EOY11198	1e-140	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2946	24	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	1e-109	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]