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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00024733-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | bZIP | ||||||||
Protein Properties | Length: 234aa MW: 26536.1 Da PI: 8.194 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 38.3 | 3e-12 | 108 | 158 | 6 | 56 |
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 6 rerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 rerr++kNRe+A rsR+RK+a+ +eLe + +Le+eN+ L ke e kk+ SMil_00024733-RA_Salv 108 RERRMIKNRESAARSRERKQAYEAELESMAVKLEEENDILLKEKAERKKKR 158 8*************************************9987766665554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.5E-7 | 103 | 167 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.117 | 105 | 157 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 9.8E-12 | 106 | 162 | No hit | No description |
SuperFamily | SSF57959 | 7.5E-9 | 108 | 156 | No hit | No description |
CDD | cd14707 | 1.21E-14 | 108 | 147 | No hit | No description |
Pfam | PF00170 | 1.2E-9 | 108 | 158 | IPR004827 | Basic-leucine zipper domain |
PROSITE pattern | PS00036 | 0 | 110 | 125 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
LIPPSRSMSP DNSEPPRTGK RSADDVWKEI MAGTQPKKEM MTLEDFLLKA EEAASTGAAA 60 AVKLKEEGGS IGGIFDYMNS TEEGGDARAR AKRSFSLSAA PGKAVELRER RMIKNRESAA 120 RSRERKQAYE AELESMAVKL EEENDILLKE KAERKKKRLK KVIIFLSYAE CDTCNRYAKT 180 TTHPAEKRLH AVVIFGHTEV MRRDFLQWDE ENGFYGHISE YSSEMYDLST PTFR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 153 | 160 | RKKKRLKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8146148}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022874483.1 | 2e-43 | G-box-binding factor 4-like isoform X1 | ||||
Swissprot | P42777 | 3e-27 | GBF4_ARATH; G-box-binding factor 4 | ||||
TrEMBL | A0A4D8ZAC3 | 2e-67 | A0A4D8ZAC3_SALSN; ABA responsive element binding factor | ||||
TrEMBL | A0A4D9C4L5 | 3e-68 | A0A4D9C4L5_SALSN; ABA responsive element binding factor | ||||
STRING | Migut.C00999.1.p | 3e-45 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2771 | 24 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03970.1 | 2e-23 | G-box binding factor 4 |