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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00024533-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | TCP | ||||||||
Protein Properties | Length: 329aa MW: 36021.5 Da PI: 9.6027 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 142.3 | 3.8e-44 | 75 | 212 | 2 | 136 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssssaseceaessss 80 a kkdrhski T +g+RdRRvRls+ +a++fFdLq+ LGfdk+skt++WLl+++k+ai++l + +s +sece +s ++ SMil_00024533-RA_Salv 75 ASKKDRHSKIDTVQGPRDRRVRLSIGVARKFFDLQENLGFDKPSKTLDWLLTKSKTAIQDLEEMkerdaaaaaKSGGSSECEVDSGEN 162 78*************************************************************9554433322222224442222222 PP TCP 81 sasnsssgkaaksaakskksqksaasalnlakesrakarararertrekmriknkl 136 a+ + + +a++s+k ++ aa++ + akesr karararertrekm+ik kl SMil_00024533-RA_Salv 163 GAE-----NPKHAANSSNKLKAAAAAKDSSAKESRVKARARARERTREKMCIK-KL 212 222.....333333356666667777789999********************9.44 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.1E-39 | 76 | 208 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.196 | 77 | 135 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 12.151 | 189 | 206 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MFSKNNAYNF SLPSASSHPR TSAAALVGLN ANDFLLHHHD MLSAHHHFAA NQELCGLSGD 60 HPLAAAANPC GGAKASKKDR HSKIDTVQGP RDRRVRLSIG VARKFFDLQE NLGFDKPSKT 120 LDWLLTKSKT AIQDLEEMKE RDAAAAAKSG GSSECEVDSG ENGAENPKHA ANSSNKLKAA 180 AAAKDSSAKE SRVKARARAR ERTREKMCIK KLNETRNINA DFAPIHFMNN QLDLRKIAAA 240 SSSNINLGFR EAMQLHCHPT YEAHAAANHE DLIQESIVIK RKVKNPLGFQ QNLIISSSNY 300 GVPAPYNAAA AENWDNICAI LDQHKFINR |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM526797 | 4e-73 | KM526797.1 Perovskia atriplicifolia TCP transcription factor (CYC2B) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012835027.1 | 4e-84 | PREDICTED: transcription factor DICHOTOMA-like | ||||
TrEMBL | A0A4D9BU40 | 1e-127 | A0A4D9BU40_SALSN; Uncharacterized protein | ||||
STRING | Migut.K00858.1.p | 2e-83 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4333 | 22 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67260.2 | 7e-25 | TCP family protein |