PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00024469-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C2H2
Protein Properties Length: 121aa    MW: 13879.8 Da    PI: 9.5099
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00024469-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.54.9e-054163123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           ++C++C++ F ++  L  H++ H
  SMil_00024469-RA_Salv 41 FSCNYCTRKFYSSQALGGHQNAH 63
                           89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.52E-73868No hitNo description
Gene3DG3DSA:3.30.160.608.1E-43967IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.2194168IPR007087Zinc finger, C2H2
PROSITE patternPS0002804363IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MESERCKSSH SYLMEKQEKM NPVLDLCLSV STKEFEENRV FSCNYCTRKF YSSQALGGHQ  60
NAHKRERRAP PLHPSLTMHG PNLKYYKFGG RRAAPPPLRD TTTTATANQQ DFKILDLSLT  120
L
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A4D9ARP11e-24A0A4D9ARP1_SALSN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA796945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.12e-15zinc-finger protein 1