PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00024330-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 91aa    MW: 10355.7 Da    PI: 10.0235
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00024330-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.63.3e-0619591554
                           HHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                    HLH 15 riNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                           +i +  ++L +llP+ + + +s K s   +L+++++YI++L
  SMil_00024330-RA_Salv 19 QIIDLVSKLHQLLPEiRNNRRSNKASANKVLQETCNYIRNL 59
                           56667799*******995666666666679*********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.01459IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-71964IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-72278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MSGRRSRPST NTSRITDDQI IDLVSKLHQL LPEIRNNRRS NKASANKVLQ ETCNYIRNLH  60
KEVDDLSERL SRLLSSIDAD SPEAAIIRSL I
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016559055.11e-46PREDICTED: transcription factor PRE6-like
SwissprotQ9LJX15e-42PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A2G9I4F95e-50A0A2G9I4F9_9LAMI; Uncharacterized protein
STRINGPGSC0003DMT4000177486e-46(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35324161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.13e-31bHLH family protein