PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

SMil_00024328-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

G2-like

Protein Properties

Length: 312aa MW: 33844.1 Da PI: 6.7853

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00024328-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104	9.3e-33	43	97	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LHerFv+av+qLGG+ kAtPk+i+++m+vkgLtl h+kSHLQkYRl SMil_00024328-RA_Salv 43 KPRLRWTADLHERFVDAVAQLGGASKATPKAIMRTMGVKGLTLFHLKSHLQKYRL 97 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.4E-31	40	98	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.408	40	100	IPR017930	Myb domain
TIGRFAMs	TIGR01557	2.5E-23	43	98	IPR006447	Myb domain, plants
SuperFamily	SSF46689	3.76E-16	43	99	IPR009057	Homeodomain-like
Pfam	PF00249	3.3E-8	45	96	IPR001005	SANT/Myb domain
Pfam	PF14379	6.5E-16	138	183	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MFPRLIQPRD AMLPQENIQL PNAASYGQRG GGDPCLVLTS DPKPRLRWTA DLHERFVDAV 60 AQLGGASKAT PKAIMRTMGV KGLTLFHLKS HLQKYRLGKQ SGKELGEASK DGAYLLDSPR 120 ASNSPQNLQA SDINEGYEVK EALRAQMEVQ SKLHLQVEAE KHLQIRQEAE RRYLAMLERA 180 CKMLADQILG TTVTNDDGDG YEGKGTKASP NNSQTPLGSF PSQSADELGV PGIVELTPNL 240 HQQQQQQQQQ CADCSTESCL TSHESPVGLP SPPGGKRALL NVDSTNNSFI WGGESDLHLV 300 RVSSHGIAGC GV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	9e-19	43	99	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	9e-19	43	99	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	9e-19	43	99	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	9e-19	43	99	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020554068.1	1e-176	uncharacterized protein LOC105175200
TrEMBL	A0A4D9B7F8	0.0	A0A4D9B7F8_SALSN; Uncharacterized protein
STRING	Migut.M01478.1.p	1e-158	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9764	20	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13640.1	2e-65	G2-like family protein