PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00024126-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 717aa    MW: 79156.6 Da    PI: 5.4331
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00024126-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.77.4e-07606650655
                            HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                            +++ r+RR++i  + +eL +l+P         +++ ae+L+ A +Y+k Lq
  SMil_00024126-RA_Salv 606 SIAARQRRRKITVKTQELGKLVPGgH------RMNTAEMLQSAYNYVKFLQ 650
                            6788*******************955......9*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF520475.89E-5416300No hitNo description
Gene3DG3DSA:3.80.10.103.8E-4018202IPR032675Leucine-rich repeat domain, L domain-like
SMARTSM003693002548IPR003591Leucine-rich repeat, typical subtype
SMARTSM00369147397IPR003591Leucine-rich repeat, typical subtype
SMARTSM0036963122146IPR003591Leucine-rich repeat, typical subtype
SMARTSM0036971170193IPR003591Leucine-rich repeat, typical subtype
Gene3DG3DSA:3.80.10.101.1E-49203434IPR032675Leucine-rich repeat domain, L domain-like
PfamPF138551.1E-7227284IPR001611Leucine-rich repeat
SMARTSM0036985273297IPR003591Leucine-rich repeat, typical subtype
SMARTSM00369190326351IPR003591Leucine-rich repeat, typical subtype
SuperFamilySSF520475.89E-54331413No hitNo description
PfamPF138555.9E-7333388IPR001611Leucine-rich repeat
SMARTSM0036913375399IPR003591Leucine-rich repeat, typical subtype
PROSITE profilePS5088812.373600649IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-10601656IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.67E-11602660IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.12E-7603654No hitNo description
SMARTSM003534.0E-9606655IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-4606650IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 717 aa     Download sequence    Send to blast
MLKPGGFEGR LQLSLWFIPL NLYTLTTLQE LSLPNNQLSG AIDGAIVNLS NLIILELHVN  60
QLWGELPSNI GLLSKLQQLQ LHSNNLNGTI PPSLTDCTNL TTLLLRNNLF SGQIAALDFS  120
KLQRLQALDL GNNTLVGGIP ESLCLCKSAT AIRLAFNQLT GEVPPCMASL HSLIHLSLSD  180
NLLSNVVGAL TTLRHCENLA VLFLSRCFHD ERMPDDDDLL HLDSFKNLQI LTLGGCKLRG  240
EIPTWISKLR KVKVLNLSFN KISGPIPAWL GSMPSLYVLN LTQNFLSGEI PREIGRLPAL  300
ISDNGSTDLS HLALPFLFDK LQYNRLFNLP RGLKLGNNSL SGSIPAEIGQ LKLLIILDLS  360
SNELSGGIPE QLSNLTNLER LDMSGNHLSG EIPAALTKLH FLSAFSVANN DLQGEIPKGG  420
QFETFGAAAF EGNPKLINGS HVVAVAPPRV EEEEEEEEGL WHNTRLPFGL GYFVGVIPSS  480
SMALSYYTFQ QPDYSGDDPE LQSLLNPDGD SFCNSLLCDD LTYHANGLPL DLDNLTTATQ  540
PPPFLLPHQQ QQSQAPLFHF PNRHKLYDYS LPEFVLPPPL PQFPAADFST RICENAKNET  600
SLSAQSIAAR QRRRKITVKT QELGKLVPGG HRMNTAEMLQ SAYNYVKFLQ AQVALLEFLG  660
SHHQEVPFEG EEELQNLLES PLIQEKLYST QHCLLPNKLA EQVPLLKSNP HLLEKDH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4z63_A2e-861843342605Phytosulfokine receptor 1
4z64_A2e-861843342605Phytosulfokine receptor 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2575140.0KP257514.1 Salvia miltiorrhiza clone 81 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089754.10.0receptor-like protein 2
TrEMBLA0A0H3YBU30.0A0A0H3YBU3_SALMI; Basic helix-loop-helix transcription factor
STRINGMigut.N00536.1.p0.0(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.11e-16bHLH family protein