PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

SMil_00024088-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

C2H2

Protein Properties

Length: 434aa MW: 48070.2 Da PI: 10.0391

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00024088-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.8	4e-05	206	228	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C++Cg+ F ++ L++H + H SMil_00024088-RA_Salv 206 TCHKCGEQFVKWEALESHHLSkH 228 6*****************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	207	228	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	1.06E-20	230	432	No hit	No description
Gene3D	G3DSA:3.90.228.10	5.7E-8	250	404	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence Send to blast
LSSHVNHFLC NEFTSSSSSS CVPLNFSCIQ QNAEALNTKK EKRMWEKTKK KKEKIPSVWF 60 SLKNSLHCKS DPSDVHDPHP HPRRPEKHLS SILTKKSGRS GCSRSIANLK DVIHGSKRHL 120 DRPPACSPRS IGSSEFLNPI AHEVIFTNSK CDLKITGFHH DPAAAVGNSR PAPQTPTLNT 180 KNPNLSLSQK RAPLERNAAV GGGAATCHKC GEQFVKWEAL ESHHLSKHAV TELVEGDSSR 240 KIVEIICRSS KTESRSVRIE RVLKVHNMHK SLCRFEDYRE MVKMRASKLP KKHPRCLADG 300 NELLRFYGTH AACALGVGSS SLCVSEKCSV CRIIRHGFSS KREFKNGVGV FTTSTSGRAL 360 ESIEEDPSLR KALIVCRVIA GRVHRPLDNV HHIIGQTGFD SLAGKVGLYS NVEELYLLSP 420 KALLPCFVVI CKTT

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence Send to blast

LSSHVNHFLC NEFTSSSSSS CVPLNFSCIQ QNAEALNTKK EKRMWEKTKK KKEKIPSVWF  60
SLKNSLHCKS DPSDVHDPHP HPRRPEKHLS SILTKKSGRS GCSRSIANLK DVIHGSKRHL  120
DRPPACSPRS IGSSEFLNPI AHEVIFTNSK CDLKITGFHH DPAAAVGNSR PAPQTPTLNT  180
KNPNLSLSQK RAPLERNAAV GGGAATCHKC GEQFVKWEAL ESHHLSKHAV TELVEGDSSR  240
KIVEIICRSS KTESRSVRIE RVLKVHNMHK SLCRFEDYRE MVKMRASKLP KKHPRCLADG  300
NELLRFYGTH AACALGVGSS SLCVSEKCSV CRIIRHGFSS KREFKNGVGV FTTSTSGRAL  360
ESIEEDPSLR KALIVCRVIA GRVHRPLDNV HHIIGQTGFD SLAGKVGLYS NVEELYLLSP  420
KALLPCFVVI CKTT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020554053.1	0.0	uncharacterized protein LOC105174809
TrEMBL	A0A1U8AWZ1	0.0	A0A1U8AWZ1_NELNU; uncharacterized protein LOC104604941
STRING	XP_010267823.1	0.0	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2244	22	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27240.1	1e-153	C2H2 family protein