PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00024001-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

Trihelix

Protein Properties

Length: 465aa MW: 51634 Da PI: 6.8505

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00024001-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	51.5	2.6e-16	25	115	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 +Wt++ + +L++a ++ +l+rg+l++++W+ev++++ + ++ +r+ +qCk++++ l+k+yk +++ + + ss++p+f+ SMil_00024001-RA_Salv 25 CWTEEATSTLVDAWGSRYLELNRGNLRQKDWQEVADAVnarhgHTKKTRRTDVQCKNRIDTLKKKYKTERAKIADSNGALSSSWPFFQ 112 8***********************************99888888999******************99999888999**** PP trihelix 84 qle 86 +le SMil_00024001-RA_Salv 113 RLE 115 997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	6.3E-26	23	115	No hit	No description
CDD	cd14702	5.14E-8	383	422	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence Send to blast
MGDLTDSSTP QPPPSSRQAP FREDCWTEEA TSTLVDAWGS RYLELNRGNL RQKDWQEVAD 60 AVNARHGHTK KTRRTDVQCK NRIDTLKKKY KTERAKIADS NGALSSSWPF FQRLELLIGS 120 NFQKHQNKVA SSGSGTATVT GMPFQSPQST PPMSLPSPPM AVPLPYRKPL TSAMITPMLL 180 PQKRPSPSPV VDESYFRRNY SAMAAAAAAA EDEADADEDD VESEGEEAER SEGRAADEEE 240 EGGEGMRRLA KAIERFGEIY EKVESMKQKQ MVELEKQRMQ FAKDLEVQRM RLFMDTQVQL 300 EKIKQTKRSG SSDGLVECSS VTLASELPCG VYWSIASCQI TSVISNGITL FSASRISNGV 360 RSSPPNNGWC SISPRILAGT SSSAWRSHLR KQKHMEELIA QVAELRRQNH QILTSLRATQ 420 HHVAVESENT ASDLGFPQQN PLAPPLEPPD PHQPPRHPPP SDPIC

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence Send to blast

MGDLTDSSTP QPPPSSRQAP FREDCWTEEA TSTLVDAWGS RYLELNRGNL RQKDWQEVAD  60
AVNARHGHTK KTRRTDVQCK NRIDTLKKKY KTERAKIADS NGALSSSWPF FQRLELLIGS  120
NFQKHQNKVA SSGSGTATVT GMPFQSPQST PPMSLPSPPM AVPLPYRKPL TSAMITPMLL  180
PQKRPSPSPV VDESYFRRNY SAMAAAAAAA EDEADADEDD VESEGEEAER SEGRAADEEE  240
EGGEGMRRLA KAIERFGEIY EKVESMKQKQ MVELEKQRMQ FAKDLEVQRM RLFMDTQVQL  300
EKIKQTKRSG SSDGLVECSS VTLASELPCG VYWSIASCQI TSVISNGITL FSASRISNGV  360
RSSPPNNGWC SISPRILAGT SSSAWRSHLR KQKHMEELIA QVAELRRQNH QILTSLRATQ  420
HHVAVESENT ASDLGFPQQN PLAPPLEPPD PHQPPRHPPP SDPIC

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00413	DAP	Transfer from AT3G58630	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020546998.1	1e-156	trihelix transcription factor ASIL1 isoform X1
Refseq	XP_020546999.1	1e-156	trihelix transcription factor ASIL1 isoform X1
Refseq	XP_020547000.1	1e-156	trihelix transcription factor ASIL1 isoform X1
TrEMBL	A0A2G9GU26	1e-149	A0A2G9GU26_9LAMI; Transcription factor GT-2
STRING	Migut.M01037.1.p	1e-132	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1318	23	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58630.1	1e-39	sequence-specific DNA binding transcription factors