PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00023988-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

bHLH

Protein Properties

Length: 424aa MW: 44699.9 Da PI: 6.9704

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00023988-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.1	5.7e-12	236	281	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq SMil_00023988-RA_Salv 236 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 281 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.76E-13	229	285	No hit	No description
SuperFamily	SSF47459	4.97E-17	229	291	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.39	231	280	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-16	233	290	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.8E-9	236	281	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-13	237	286	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048767	Biological Process	root hair elongation
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence Send to blast
MQPISGEFGA MNNLNALLNQ HQISSLHELH SHGQLPQMLQ SVSQFDPVAS HDDFLEQMLS 60 SVPSSAAYPW EDDHSQQQME EHSAAVLASK LRQHQISGGA AKALMFQQQL LLSRGLAAGN 120 GGLCSPTGSD GALLPMAQGH HNDGVDGNGF KSIQANDLSV KALFNGFTGS LGQTSNQSQH 180 FHHPQDQNYG AAGTATPSTA AQAMNQPAVS GSSGGGASGQ PRQRVRARRG QATDPHSIAE 240 RLRRERIAER MKALQELVPN ANKTDKASML DEIIDYVKFL QLQVKVLSMS RLGGASAVAP 300 LVADISSEGR SSNGTQTASS SNNNEGMTVT EHQVAKLMEE DMGSAMQYLQ GKGLCLMPIS 360 LATAISTATS HSRNPLAAAN SLKISGISDA RGPTSPSLSV LTVQSATVGG NLNREPSLKD 420 VSKP

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence Send to blast

MQPISGEFGA MNNLNALLNQ HQISSLHELH SHGQLPQMLQ SVSQFDPVAS HDDFLEQMLS  60
SVPSSAAYPW EDDHSQQQME EHSAAVLASK LRQHQISGGA AKALMFQQQL LLSRGLAAGN  120
GGLCSPTGSD GALLPMAQGH HNDGVDGNGF KSIQANDLSV KALFNGFTGS LGQTSNQSQH  180
FHHPQDQNYG AAGTATPSTA AQAMNQPAVS GSSGGGASGQ PRQRVRARRG QATDPHSIAE  240
RLRRERIAER MKALQELVPN ANKTDKASML DEIIDYVKFL QLQVKVLSMS RLGGASAVAP  300
LVADISSEGR SSNGTQTASS SNNNEGMTVT EHQVAKLMEE DMGSAMQYLQ GKGLCLMPIS  360
LATAISTATS HSRNPLAAAN SLKISGISDA RGPTSPSLSV LTVQSATVGG NLNREPSLKD  420
VSKP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	240	245	RLRRER

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00659	PBM	Transfer from Pp3c14_15890	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP257511	0.0	KP257511.1 Salvia miltiorrhiza clone 78 basic helix-loop-helix transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020551186.1	0.0	LOW QUALITY PROTEIN: transcription factor bHLH69-like
Swissprot	Q9ZUG9	3e-86	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A0H3Y7K9	0.0	A0A0H3Y7K9_SALMI; Basic helix-loop-helix transcription factor
STRING	Migut.J01333.1.p	1e-167	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3759	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	2e-74	LJRHL1-like 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]