PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

MYB_related

Protein Properties

Length: 109aa MW: 12579.6 Da PI: 8.7632

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00023956-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.9	2.3e-18	19	66	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++++G+g+W++++ g+ R+ k+c++rw +yl SMil_00023956-RA_Salv 19 KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYL 66 79****************************99**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	24.586	14	70	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	9.9E-22	17	65	IPR009057	Homeodomain-like
SMART	SM00717	2.0E-14	18	68	IPR001005	SANT/Myb domain
Pfam	PF00249	4.3E-17	19	66	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.84E-20	20	89	IPR009057	Homeodomain-like
CDD	cd00167	8.42E-12	21	66	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.9E-4	66	88	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 109 aa Download sequence Send to blast
LRNDKMGRQP CCDKVGIKKG PWTPEEDIIL VSYIQEHGPG NWRAVPTNTG LLRCSKSCRL 60 RWTNYLRPGI ERGNFTPHEE GMITHLQALL VDINFLIREK AYPFLWGLC

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269\|PubMed:22018045}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269\|PubMed:22018045}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF059389	1e-102	KF059389.1 Salvia miltiorrhiza MYB-related transcription factor (MYB35) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010105221.1	5e-58	myb-related protein 306 isoform X1
Swissprot	B3VTV7	4e-56	MYB60_VITVI; Transcription factor MYB60
TrEMBL	W9RYX6	1e-56	W9RYX6_9ROSA; Myb-related protein 306
STRING	XP_010105221.1	2e-57	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08810.1	2e-58	myb domain protein 60

Publications ? help Back to Top
Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507]