PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00023932-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | FAR1 | ||||||||
Protein Properties | Length: 296aa MW: 34167.1 Da PI: 9.9383 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 43.7 | 9e-14 | 5 | 77 | 24 | 90 |
FAR1 24 rngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +++++ + f C +eg + ++kk+ ++k rr++++tr gCka+++ ++++dg ++ t++++ HnH+l+ SMil_00023932-RA_Salv 5 KHRQVLYQYFICRREGVKPDSKKDisessvQKKIRRRKPSTRNGCKARITTTLNDDGYYVFTSFSELHNHSLV 77 456789999*************99****9999999************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.6E-11 | 5 | 77 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MKRGKHRQVL YQYFICRREG VKPDSKKDIS ESSVQKKIRR RKPSTRNGCK ARITTTLNDD 60 GYYVFTSFSE LHNHSLVTED VRHLMKFNRK MDESHQMIML KCAKSNIGPV RAFRIFKELV 120 GSFEEVGCTS KDFKNLSYTM NSYADGVDAQ LLLDSLFWSD AVAVQNSRYL VMRCPLMPRI 180 QRTVHRWLKA ASAEVISTSN MKSRNKSLMA EAFRCIGIAE GNDELADSLL TELKRWAEIN 240 SNGAQCLSPR AESKKCLNYF MLKRRKNQRE DAGNVRLVRH DSRNCGKVVE EESDEE |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3136 | 2 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 3e-13 | FAR1-related sequence 5 |