PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

SMil_00023673-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

C2H2

Protein Properties

Length: 414aa MW: 45256.8 Da PI: 9.7246

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00023673-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.6	9.4e-05	184	206	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 C+ Cg++F+ ++L++H+ + H SMil_00023673-RA_Salv 184 ACSECGEVFPKIESLEHHQAVrH 206 6******************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	183	206	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.141	183	211	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	3.17E-22	208	410	No hit	No description
Gene3D	G3DSA:3.90.228.10	2.5E-10	209	410	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence Send to blast
MVWMRERDTT NPLAALLLRF VALLFMALLT FLPEQSQEQK KHAPNSNSKR KKKKQPPPAK 60 PPSSWDQFKN LLTCKQIVDS KIHDPSKHNN NIYSSCSSIC TFRDANTRVV HRADNSPEGS 120 TAGQETRLLT KKTTHGSSAR SANSASAARS ATRGIQLRKL SGCYECHAIV DPTRYPLPRT 180 TICACSECGE VFPKIESLEH HQAVRHAVSE LGPEDSSRNI VEIIFKSSWL KKDNPICKID 240 RILKVHNTQR TIQRFEDYRD AVKIRATANA AKRSARCAAD GNELLRFHCA TLTCSLGARG 300 ASSLCGSIPA CGVCTVIRHG FQGAKATGIR TTASSGRAHD CLAAPAARRA MLVCRVIAGR 360 VKRGPEDADD GAAAGSYDSV AGHAGVYSNM EELHVFSSRA ILPCFVVIYK ALEC

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence Send to blast

MVWMRERDTT NPLAALLLRF VALLFMALLT FLPEQSQEQK KHAPNSNSKR KKKKQPPPAK  60
PPSSWDQFKN LLTCKQIVDS KIHDPSKHNN NIYSSCSSIC TFRDANTRVV HRADNSPEGS  120
TAGQETRLLT KKTTHGSSAR SANSASAARS ATRGIQLRKL SGCYECHAIV DPTRYPLPRT  180
TICACSECGE VFPKIESLEH HQAVRHAVSE LGPEDSSRNI VEIIFKSSWL KKDNPICKID  240
RILKVHNTQR TIQRFEDYRD AVKIRATANA AKRSARCAAD GNELLRFHCA TLTCSLGARG  300
ASSLCGSIPA CGVCTVIRHG FQGAKATGIR TTASSGRAHD CLAAPAARRA MLVCRVIAGR  360
VKRGPEDADD GAAAGSYDSV AGHAGVYSNM EELHVFSSRA ILPCFVVIYK ALEC

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012835734.1	0.0	PREDICTED: uncharacterized protein LOC105956430
TrEMBL	A0A4D8Y9F8	0.0	A0A4D8Y9F8_SALSN; Uncharacterized protein
STRING	Migut.C00823.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5195	23	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-131	C2H2-like zinc finger protein