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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
SMil_00023477-RA_Salv |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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| Family |
LBD |
| Protein Properties |
Length: 156aa MW: 17333.7 Da PI: 7.8152 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| SMil_00023477-RA_Salv | genome | NDCTCM | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 119.1 | 2.6e-37 | 16 | 115 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88
aCaaCk++rr+Ca+dC+lapyf a+++++fanvh+lFG ++v+kll+++ + +r+da++s+vyeA+ ra Pv G++g +l++q++
SMil_00023477-RA_Salv 16 ACAACKHQRRRCAADCPLAPYFSADRQSDFANVHRLFGIKKVSKLLQSVAPRHRDDAAKSIVYEANLRAMHPVAGCFGAAAELRRQIQ 103
7*************************************************************************************** PP
DUF260 89 qlkaelallkee 100
+ael+ + ++
SMil_00023477-RA_Salv 104 ICEAELEIVSQN 115
******999876 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 156 aa
Download sequence Send
to blast |
MGTPEPPPPL PPAKSACAAC KHQRRRCAAD CPLAPYFSAD RQSDFANVHR LFGIKKVSKL 60
LQSVAPRHRD DAAKSIVYEA NLRAMHPVAG CFGAAAELRR QIQICEAELE IVSQNLAFLK 120
QNNSFVVNNQ ETDFQIEENS NLQQFFNDLK PALADQ
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5ly0_A | 6e-26 | 8 | 116 | 3 | 111 | LOB family transfactor Ramosa2.1 |
| 5ly0_B | 6e-26 | 8 | 116 | 3 | 111 | LOB family transfactor Ramosa2.1 |
