PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00023476-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family LBD
Protein Properties Length: 235aa    MW: 26777.6 Da    PI: 4.2331
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00023476-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260104.31.1e-32191191101
                 DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                            +CaaC ++   C++dC lapyfpae+++++ nvh+lFG+++v+++l+a++++ r+da++s++yeA+ ra  Pv G+++ il+l  q++
  SMil_00023476-RA_Salv  19 SCAACWLMHLPCPDDCLLAPYFPAERAADYVNVHRLFGRQKVINILNAVKPHLRDDAITSITYEANFRAAHPVGGCTAAILALVAQIN 106
                            6*************************************************************************************** PP

                 DUF260  89 qlkaelallkeel 101
                             l a+l++++++l
  SMil_00023476-RA_Salv 107 YLTAQLDAVRQQL 119
                            *********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.23318119IPR004883Lateral organ boundaries, LOB
PfamPF031958.6E-3119116IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MSSPPPLPPL PPGRRRKRSC AACWLMHLPC PDDCLLAPYF PAERAADYVN VHRLFGRQKV  60
INILNAVKPH LRDDAITSIT YEANFRAAHP VGGCTAAILA LVAQINYLTA QLDAVRQQLD  120
QNLNQYPRFL NLDQEIPEDA PQFFDAGDNQ INNPIVLNGD HQQIEEDDQQ QFFNGGDNQM  180
NPIVLNGDHQ QIEEDDQQQF FNGDNQNPVS LNHDQEFLED LQRYFNFNLN DDNDQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-222011912111LOB family transfactor Ramosa2.1
5ly0_B2e-222011912111LOB family transfactor Ramosa2.1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28661752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27650.15e-25LOB domain-containing protein 25