PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00023345-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family M-type_MADS
Protein Properties Length: 142aa    MW: 16176.9 Da    PI: 10.3583
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00023345-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.43.3e-27959151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           k+i+n + rqvtfskRr+g++KKA ELS+LCdae+a+i+fs +gkl++yss
  SMil_00023345-RA_Salv  9 KKIDNLTARQVTFSKRRKGLFKKARELSTLCDAEIALIVFSASGKLFDYSS 59
                           68***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.352161IPR002100Transcription factor, MADS-box
SMARTSM004327.7E-39160IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-27323IPR002100Transcription factor, MADS-box
CDDcd002651.50E-39374No hitNo description
SuperFamilySSF554551.96E-29374IPR002100Transcription factor, MADS-box
PfamPF003194.1E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-273859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MVRQKIEIKK IDNLTARQVT FSKRRKGLFK KARELSTLCD AEIALIVFSA SGKLFDYSSS  60
SMRQLIQRHD HQTEKCKLLR QQPLCIQGSD SHGVLSKKLM ELSVELKNPA QEMLLTKELR  120
LLPTAMAQTH SSSWGLPYSN CN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A9e-19174174MEF2 CHIMERA
6byy_B9e-19174174MEF2 CHIMERA
6byy_C9e-19174174MEF2 CHIMERA
6byy_D9e-19174174MEF2 CHIMERA
6bz1_A9e-19174174MEF2 CHIMERA
6bz1_B9e-19174174MEF2 CHIMERA
6bz1_C9e-19174174MEF2 CHIMERA
6bz1_D9e-19174174MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020551410.17e-48MADS-box protein SVP isoform X3
SwissprotQ9FUY69e-34JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLA0A4D8ZN103e-59A0A4D8ZN10_SALSN; Uncharacterized protein
STRINGMigut.B00557.1.p2e-43(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.12e-35MIKC_MADS family protein
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]