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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00023159-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | AP2 | ||||||||
Protein Properties | Length: 506aa MW: 55419.2 Da PI: 7.9002 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 35.8 | 2e-11 | 181 | 236 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 ++GV++++++gr++A+++d + ++ k + g ++ +e+Aa+a++ a++k++g SMil_00023159-RA_Salv 181 IFRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 236 69******************5444.2455536655.779999**************98 PP | |||||||
2 | AP2 | 47.3 | 5.2e-15 | 279 | 330 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g SMil_00023159-RA_Salv 279 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 330 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.67E-18 | 180 | 246 | No hit | No description |
SuperFamily | SSF54171 | 1.18E-14 | 180 | 246 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 7.8E-9 | 181 | 236 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.5E-22 | 181 | 250 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.6E-12 | 181 | 245 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.056 | 181 | 244 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.7E-6 | 182 | 193 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.5E-10 | 279 | 330 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-18 | 279 | 340 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 7.08E-24 | 279 | 340 | No hit | No description |
PROSITE profile | PS51032 | 19.045 | 280 | 338 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-33 | 280 | 344 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.3E-18 | 280 | 339 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.7E-6 | 320 | 340 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0040019 | Biological Process | positive regulation of embryonic development | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0060772 | Biological Process | leaf phyllotactic patterning | ||||
GO:0060774 | Biological Process | auxin mediated signaling pathway involved in phyllotactic patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 506 aa Download sequence Send to blast |
LDLYLCSTLP LHVFIFTHVI YPLSLENSES SAVSQRKPSH RHHLSASKFS RSPTIMDMDS 60 SHPNWLVFSL SNHSLFQPSF TSNPSSSSSA VDHHQDNGSG AVLGGGPKLE DFLGSSGGAA 120 VAQFDGMPEM EIYDDSELKT IAASFLRGFS AEQTNTNLQK QTAAAPPPKK AVETFGQRTS 180 IFRGVTRHRW TGRYEAHLWD NSCRREGQSR KGRQGGYDKE EKAARAYDLA ALKYWGPTTT 240 TNFPVSDYER EMEEMKHMTR QEFVASLRRR SSGFSRGASI YRGVTRHHQH GRWQARIGRV 300 AGNKDLYLGT FSTQEEAAEA YDIAAIKFRG LNAVTNFDMS RYDVRSIASS NLPIGGANNK 360 PKTTSESIPE NKSAEVLPSE DKNTAASLPF PAQNTAATIS FALPIKQDHS SNLWAALGYQ 420 NSADIKNPNH GAAVFQGNGT TPFGVEFQLN DNEGFYNYQQ QGGGGARGVA VQNGTSHEAA 480 GMSNWIEPAA AKSNLSSYQT PIFGVE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011069921.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL5 isoform X1 | ||||
Swissprot | Q6PQQ3 | 1e-145 | AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5 | ||||
TrEMBL | A0A4D9BLM4 | 0.0 | A0A4D9BLM4_SALSN; AP2-like factor, ANT lineage | ||||
STRING | Migut.J01490.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2246 | 24 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57390.1 | 1e-124 | AINTEGUMENTA-like 5 |
Publications ? help Back to Top | |||
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