PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00023034-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C2H2
Protein Properties Length: 297aa    MW: 32922.7 Da    PI: 8.1405
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00023034-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H223.21.8e-07112133223
                            EETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                             C++Cgk F+r  nL+ H+r H
  SMil_00023034-RA_Salv 112 FCEICGKGFKRDANLRMHMRAH 133
                            6*******************99 PP
2zf-C2H212.20.00057226241621
                            TTEEESSHHHHHHHHH CS
                zf-C2H2   6 CgksFsrksnLkrHir 21 
                            Cg+sFsrk+ L  H+ 
  SMil_00023034-RA_Salv 226 CGTSFSRKDKLFGHMA 241
                            **************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.07E-6108134No hitNo description
Gene3DG3DSA:3.30.160.607.5E-6111133IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.967111138IPR007087Zinc finger, C2H2
SMARTSM003550.0015111133IPR015880Zinc finger, C2H2-like
PfamPF128740.0015112131No hitNo description
PROSITE patternPS000280113133IPR007087Zinc finger, C2H2
SMARTSM0035529156189IPR015880Zinc finger, C2H2-like
SMARTSM0035524194216IPR015880Zinc finger, C2H2-like
SMARTSM00355230222246IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MSFLGDTKPP GAADPRVPLM NLSAVQARMD NLQQFLSASV SSNTPIGQPQ MEMVSAEIAS  60
AIHQIIVNGA ALLSCTPSVR SNDAVNPKAE EEVDYEIIEM DAVELLAEHV HFCEICGKGF  120
KRDANLRMHM RAHGNQFKTP EALAKPEKGG GRKTRFSCPY VGCNRNRQHG KFRALKSAVC  180
VKNHFKRSHC PKMYSCDRCH KKSFSVMADL KSHLKHCGET KWRCSCGTSF SRKDKLFGHM  240
ALFEGHMPAL QLEDKRRKPP VAELNEDVLF DGLMDGFGSI DDICFDDVFN STSASGL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011097563.11e-147protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
SwissprotQ943I62e-75STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBLA0A4D9ATN41e-152A0A4D9ATN4_SALSN; Uncharacterized protein
STRINGMigut.L00137.1.p1e-141(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA100002126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.32e-77C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]