![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SMil_00023032-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 150aa MW: 16855.8 Da PI: 7.4351 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.6 | 2.1e-08 | 129 | 149 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f++ GtC+ Gd C F+Hg SMil_00023032-RA_Salv 129 ACPDFRK-GTCRKGDACEFSHG 149 7******.*************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 9.68E-5 | 123 | 149 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.0E-5 | 124 | 150 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.582 | 125 | 150 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.2E-5 | 128 | 149 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-6 | 129 | 149 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 150 aa Download sequence Send to blast |
MAVRRCILLP WPSAADDHSS LALSPTAVNA NGNVDDYSLF FQADSLKALQ RYLPSNSTDV 60 VPEFSFADSD GSDFLPVDAH SCDNFRMFEF KVRKCTRGRS HDWTECPFAH PGEKARRRDP 120 RKYHYSGTAC PDFRKGTCRK GDACEFSHGV |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 3e-47 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. | |||
GenBank | KP717036 | 3e-47 | KP717036.1 Triticum turgidum subsp. durum cultivar Creso TZF1-B gene, complete cds. | |||
GenBank | KP717039 | 3e-47 | KP717039.1 Triticum turgidum subsp. durum cultivar Creso TZF1-B mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011078221.1 | 5e-74 | zinc finger CCCH domain-containing protein 20-like | ||||
Swissprot | Q9M0G2 | 9e-52 | C3H49_ARATH; Zinc finger CCCH domain-containing protein 49 | ||||
TrEMBL | A0A2G9H9E7 | 6e-80 | A0A2G9H9E7_9LAMI; CCCH-type Zn-finger protein | ||||
STRING | Migut.K00565.1.p | 4e-73 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1857 | 21 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G29190.1 | 3e-52 | C3H family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|