PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00022814-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family Trihelix
Protein Properties Length: 447aa    MW: 50346.5 Da    PI: 6.776
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00022814-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix78.59.9e-2568150286
               trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                            W ++e+++L+ +rre++  ++++k++k+lW+++s kmr +gf rsp++C++kw+nl k+ykk k+++ + t+++s ++ +++++e
  SMil_00022814-RA_Salv  68 WAQEETRVLVSLRREIDFLFNTSKSNKHLWDSISMKMRGKGFDRSPTMCTDKWRNLLKEYKKSKQNNPD-TNGNS-KMNFYKEIE 150
                            ********************************************************************9.45665.8*****998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.7E-559129IPR009057Homeodomain-like
PROSITE profilePS500908.73460124IPR017877Myb-like domain
SMARTSM007171.2E-464126IPR001005SANT/Myb domain
SuperFamilySSF466895.31E-564163IPR009057Homeodomain-like
CDDcd122032.27E-2466131No hitNo description
PfamPF138373.3E-1967152No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MYSEKGQEQE ESAIDFYNSK ESSPNENNMI IQISDTTSGG DDPSTAANQS SSNPPPPSPA  60
PKKRAETWAQ EETRVLVSLR REIDFLFNTS KSNKHLWDSI SMKMRGKGFD RSPTMCTDKW  120
RNLLKEYKKS KQNNPDTNGN SKMNFYKEIE EIMRERNKNG NCWKNSAASN DAALLLLKLT  180
RLCNLLIKQM RSIASRESLQ RQQRVCIVPL FPSAVGLSWD SGGELVLVDE LRHRCCCGGI  240
DDASLTFGPV EGNGRSALNL ERRLDHEAHP LAITAADTVG ASGASPWNWR ETPGNGEHRN  300
TYDGRVITVK LGDYTKRIGI DGSGDAIKEA IKSAFRLRTK RAFWLEDEDS VVRSLDRDMP  360
LGNYTLHVDE VSSKMTNLIA GLTIKVCLFD GPEHLAVHSE EKTFYTEGDF HQFLSRRCWT  420
CLREYDGYRN IDSLDELCPG ALYRGVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A2e-3562148186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00004PBMTransfer from 920224Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071308.10.0trihelix transcription factor GT-4-like
SwissprotQ9LU921e-132TGT4_ARATH; Trihelix transcription factor GT-4
TrEMBLA0A4D9B8M90.0A0A4D9B8M9_SALSN; Uncharacterized protein
STRINGMigut.E00236.1.p1e-164(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51132136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.11e-119Trihelix family protein