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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00022686-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | G2-like | ||||||||
Protein Properties | Length: 352aa MW: 38840.8 Da PI: 7.3096 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 106.5 | 1.5e-33 | 38 | 92 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerF+eav+qLGG+ekAtPk++l+lm+++gLtl+h+kSHLQkYRl SMil_00022686-RA_Salv 38 KPRLKWTPDLHERFIEAVNQLGGAEKATPKSVLKLMGIQGLTLYHLKSHLQKYRL 92 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.952 | 35 | 95 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-31 | 36 | 93 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.47E-16 | 37 | 93 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.2E-24 | 38 | 93 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.0E-10 | 40 | 91 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 3.5E-23 | 131 | 178 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MYQQQGKSMQ ASTRMSERQL YLQGGGEDSG LVLSTDAKPR LKWTPDLHER FIEAVNQLGG 60 AEKATPKSVL KLMGIQGLTL YHLKSHLQKY RLSKNIHGQA YCGSNKISAM PAENGAQTNN 120 SNTANQTNKN MHLGEAIQMQ IQVQRRLHEQ LEVQRHLQLR IEAQGKYLQS VLEKAQETLG 180 GQNMGTIGIE AAKVQLSDLA SKVSTQCLNS AFPQLSDLCL HPKQTTQAAD CSIDSCLTSS 240 CEGASLRDQE LYNNLVGMKP AAVSFGHKDN LRWRDDVKDG GMFEEKSYNL SIGIGVEADA 300 KFYGDGGEDL MKTHKTTSDQ MKLPLFSTKL DLNTDDAASS CKHLDLNGFS WT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 3e-23 | 37 | 94 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 3e-23 | 37 | 94 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 2e-23 | 38 | 94 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-23 | 38 | 94 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-23 | 38 | 94 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-23 | 38 | 94 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 3e-23 | 37 | 94 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 3e-23 | 37 | 94 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 3e-23 | 37 | 94 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 3e-23 | 37 | 94 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 3e-23 | 37 | 94 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 3e-23 | 37 | 94 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00331 | DAP | Transfer from AT3G04030 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011094327.2 | 1e-159 | myb-related protein 2 isoform X1 | ||||
Swissprot | Q9SQQ9 | 1e-113 | PHL9_ARATH; Myb-related protein 2 | ||||
TrEMBL | A0A2G9HPN4 | 1e-149 | A0A2G9HPN4_9LAMI; Uncharacterized protein | ||||
STRING | Migut.J01031.1.p | 1e-150 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2946 | 24 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04030.3 | 1e-109 | G2-like family protein |
Publications ? help Back to Top | |||
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