PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00022686-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

G2-like

Protein Properties

Length: 352aa MW: 38840.8 Da PI: 7.3096

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00022686-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.5	1.5e-33	38	92	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerF+eav+qLGG+ekAtPk++l+lm+++gLtl+h+kSHLQkYRl SMil_00022686-RA_Salv 38 KPRLKWTPDLHERFIEAVNQLGGAEKATPKSVLKLMGIQGLTLYHLKSHLQKYRL 92 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.952	35	95	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.2E-31	36	93	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.47E-16	37	93	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.2E-24	38	93	IPR006447	Myb domain, plants
Pfam	PF00249	2.0E-10	40	91	IPR001005	SANT/Myb domain
Pfam	PF14379	3.5E-23	131	178	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MYQQQGKSMQ ASTRMSERQL YLQGGGEDSG LVLSTDAKPR LKWTPDLHER FIEAVNQLGG 60 AEKATPKSVL KLMGIQGLTL YHLKSHLQKY RLSKNIHGQA YCGSNKISAM PAENGAQTNN 120 SNTANQTNKN MHLGEAIQMQ IQVQRRLHEQ LEVQRHLQLR IEAQGKYLQS VLEKAQETLG 180 GQNMGTIGIE AAKVQLSDLA SKVSTQCLNS AFPQLSDLCL HPKQTTQAAD CSIDSCLTSS 240 CEGASLRDQE LYNNLVGMKP AAVSFGHKDN LRWRDDVKDG GMFEEKSYNL SIGIGVEADA 300 KFYGDGGEDL MKTHKTTSDQ MKLPLFSTKL DLNTDDAASS CKHLDLNGFS WT

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MYQQQGKSMQ ASTRMSERQL YLQGGGEDSG LVLSTDAKPR LKWTPDLHER FIEAVNQLGG  60
AEKATPKSVL KLMGIQGLTL YHLKSHLQKY RLSKNIHGQA YCGSNKISAM PAENGAQTNN  120
SNTANQTNKN MHLGEAIQMQ IQVQRRLHEQ LEVQRHLQLR IEAQGKYLQS VLEKAQETLG  180
GQNMGTIGIE AAKVQLSDLA SKVSTQCLNS AFPQLSDLCL HPKQTTQAAD CSIDSCLTSS  240
CEGASLRDQE LYNNLVGMKP AAVSFGHKDN LRWRDDVKDG GMFEEKSYNL SIGIGVEADA  300
KFYGDGGEDL MKTHKTTSDQ MKLPLFSTKL DLNTDDAASS CKHLDLNGFS WT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	3e-23	37	94	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	3e-23	37	94	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-23	38	94	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-23	38	94	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-23	38	94	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-23	38	94	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	3e-23	37	94	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	3e-23	37	94	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	3e-23	37	94	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	3e-23	37	94	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	3e-23	37	94	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	3e-23	37	94	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00331	DAP	Transfer from AT3G04030	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011094327.2	1e-159	myb-related protein 2 isoform X1
Swissprot	Q9SQQ9	1e-113	PHL9_ARATH; Myb-related protein 2
TrEMBL	A0A2G9HPN4	1e-149	A0A2G9HPN4_9LAMI; Uncharacterized protein
STRING	Migut.J01031.1.p	1e-150	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2946	24	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	1e-109	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]