PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00022663-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family GRAS
Protein Properties Length: 550aa    MW: 60292.1 Da    PI: 5.3404
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00022663-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3503.8e-1071815493373
                   GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsP 89 
                            ++L++cA+ +s++d e+a + L rl+  +s++gdp++R+ +yfteAL +r+++   +  ka  p+     ++ +e + ++k++++++P
  SMil_00022663-RA_Salv 181 KALIDCAR-LSESDPEAAVKSLVRLQGSVSQNGDPLERVSHYFTEALYSRVVS--RQAEKAAaPTVGGGATTAEEFTLSYKALNDACP 265
                            79*****9.67779**************************************9..44444441444555567999999********** PP

                   GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgv 174
                            + kf+hltaNqaIlea+e+++++Hi+Df+i qG+QW+a+lqaLa+Rp+g+p ++Ri g+ +p+ g   + +l++tg+rL++fA+ l++
  SMil_00022663-RA_Salv 266 YSKFAHLTANQAILEATEKASKIHIVDFGIVQGIQWAAFLQALATRPAGKPkRIRISGIPAPALGdsPAPSLSATGNRLQEFANLLDL 353
                            ***********************************************66665**********99999999****************** PP

                   GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262
                            +fe ++ v + +++l+ +++r++p+E++aVn++lql++lldes +  +   + Lkl ++l+P+vv++ e e+++n+  Fl+rf +al+
  SMil_00022663-RA_Salv 354 EFELDP-VLTPVQELTASSFRIDPDEVVAVNFMLQLYNLLDESDDGVE---AALKLARTLNPRVVTLGEYEVSLNRVGFLTRFKNALK 437
                            ******.799******************************99888877...9************************************ PP

                   GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgy 349
                            yy+a+f+sle +l+r++ eri +Er llgr+i  vv    +  + r+e +e+Wr+ ++ aGF+p+++s++a++qak ll +++ s  y
  SMil_00022663-RA_Salv 438 YYTAVFESLEPNLARDAPERIQLERLLLGRRIAGVVGPGDR--KSRMEDKERWRALMDGAGFQPLAFSHYAMSQAKILLWNYSsSAMY 523
                            ************************************87655..5***************************************88889 PP

                   GRAS 350 rveee..sgslvlgWkdrpLvsvSaW 373
                            ++ ++   g l l W++ pL++vS+W
  SMil_00022663-RA_Salv 524 KLLDSspPGFLSLAWNEVPLLTVSSW 549
                            998662245566************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.249153527IPR005202Transcription factor GRAS
PfamPF035141.3E-104181549IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MAYMCTDSGN LMAIAQQVIK QKQQQEQQQH HHHHLPINPF WPPSAPQQTP TSTYALTPGF  60
PDPFPAEPAF HFSNLDHPST AFRFSEFDSD EWMESLMCGG GGGGGGGDST ESSNLQSDCD  120
TWRTTSEFSH LYPADPFPSR LSIISTPPIP PRVDSVIFSE PPLTASASSP ENSPKSKPIL  180
KALIDCARLS ESDPEAAVKS LVRLQGSVSQ NGDPLERVSH YFTEALYSRV VSRQAEKAAA  240
PTVGGGATTA EEFTLSYKAL NDACPYSKFA HLTANQAILE ATEKASKIHI VDFGIVQGIQ  300
WAAFLQALAT RPAGKPKRIR ISGIPAPALG DSPAPSLSAT GNRLQEFANL LDLEFELDPV  360
LTPVQELTAS SFRIDPDEVV AVNFMLQLYN LLDESDDGVE AALKLARTLN PRVVTLGEYE  420
VSLNRVGFLT RFKNALKYYT AVFESLEPNL ARDAPERIQL ERLLLGRRIA GVVGPGDRKS  480
RMEDKERWRA LMDGAGFQPL AFSHYAMSQA KILLWNYSSS AMYKLLDSSP PGFLSLAWNE  540
VPLLTVSSWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1441765501375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099604.10.0scarecrow-like protein 4
RefseqXP_020554688.10.0scarecrow-like protein 4
SwissprotA0A024B7I00.0SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLA0A2G9GP690.0A0A2G9GP69_9LAMI; Uncharacterized protein
TrEMBLA0A2G9I2Z90.0A0A2G9I2Z9_9LAMI; Uncharacterized protein
STRINGMigut.H00996.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA89052429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein