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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00022663-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | GRAS | ||||||||
Protein Properties | Length: 550aa MW: 60292.1 Da PI: 5.3404 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 350 | 3.8e-107 | 181 | 549 | 3 | 373 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsP 89 ++L++cA+ +s++d e+a + L rl+ +s++gdp++R+ +yfteAL +r+++ + ka p+ ++ +e + ++k++++++P SMil_00022663-RA_Salv 181 KALIDCAR-LSESDPEAAVKSLVRLQGSVSQNGDPLERVSHYFTEALYSRVVS--RQAEKAAaPTVGGGATTAEEFTLSYKALNDACP 265 79*****9.67779**************************************9..44444441444555567999999********** PP GRAS 90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgv 174 + kf+hltaNqaIlea+e+++++Hi+Df+i qG+QW+a+lqaLa+Rp+g+p ++Ri g+ +p+ g + +l++tg+rL++fA+ l++ SMil_00022663-RA_Salv 266 YSKFAHLTANQAILEATEKASKIHIVDFGIVQGIQWAAFLQALATRPAGKPkRIRISGIPAPALGdsPAPSLSATGNRLQEFANLLDL 353 ***********************************************66665**********99999999****************** PP GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262 +fe ++ v + +++l+ +++r++p+E++aVn++lql++lldes + + + Lkl ++l+P+vv++ e e+++n+ Fl+rf +al+ SMil_00022663-RA_Salv 354 EFELDP-VLTPVQELTASSFRIDPDEVVAVNFMLQLYNLLDESDDGVE---AALKLARTLNPRVVTLGEYEVSLNRVGFLTRFKNALK 437 ******.799******************************99888877...9************************************ PP GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgy 349 yy+a+f+sle +l+r++ eri +Er llgr+i vv + + r+e +e+Wr+ ++ aGF+p+++s++a++qak ll +++ s y SMil_00022663-RA_Salv 438 YYTAVFESLEPNLARDAPERIQLERLLLGRRIAGVVGPGDR--KSRMEDKERWRALMDGAGFQPLAFSHYAMSQAKILLWNYSsSAMY 523 ************************************87655..5***************************************88889 PP GRAS 350 rveee..sgslvlgWkdrpLvsvSaW 373 ++ ++ g l l W++ pL++vS+W SMil_00022663-RA_Salv 524 KLLDSspPGFLSLAWNEVPLLTVSSW 549 998662245566************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 58.249 | 153 | 527 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.3E-104 | 181 | 549 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 550 aa Download sequence Send to blast |
MAYMCTDSGN LMAIAQQVIK QKQQQEQQQH HHHHLPINPF WPPSAPQQTP TSTYALTPGF 60 PDPFPAEPAF HFSNLDHPST AFRFSEFDSD EWMESLMCGG GGGGGGGDST ESSNLQSDCD 120 TWRTTSEFSH LYPADPFPSR LSIISTPPIP PRVDSVIFSE PPLTASASSP ENSPKSKPIL 180 KALIDCARLS ESDPEAAVKS LVRLQGSVSQ NGDPLERVSH YFTEALYSRV VSRQAEKAAA 240 PTVGGGATTA EEFTLSYKAL NDACPYSKFA HLTANQAILE ATEKASKIHI VDFGIVQGIQ 300 WAAFLQALAT RPAGKPKRIR ISGIPAPALG DSPAPSLSAT GNRLQEFANL LDLEFELDPV 360 LTPVQELTAS SFRIDPDEVV AVNFMLQLYN LLDESDDGVE AALKLARTLN PRVVTLGEYE 420 VSLNRVGFLT RFKNALKYYT AVFESLEPNL ARDAPERIQL ERLLLGRRIA GVVGPGDRKS 480 RMEDKERWRA LMDGAGFQPL AFSHYAMSQA KILLWNYSSS AMYKLLDSSP PGFLSLAWNE 540 VPLLTVSSWH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 1e-144 | 176 | 550 | 1 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011099604.1 | 0.0 | scarecrow-like protein 4 | ||||
Refseq | XP_020554688.1 | 0.0 | scarecrow-like protein 4 | ||||
Swissprot | A0A024B7I0 | 0.0 | SCL7_POPEU; SCARECROW-LIKE protein 7 | ||||
TrEMBL | A0A2G9GP69 | 0.0 | A0A2G9GP69_9LAMI; Uncharacterized protein | ||||
TrEMBL | A0A2G9I2Z9 | 0.0 | A0A2G9I2Z9_9LAMI; Uncharacterized protein | ||||
STRING | Migut.H00996.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8905 | 24 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66770.1 | 0.0 | GRAS family protein |