PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00022608-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 324aa    MW: 36223.3 Da    PI: 4.5445
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00022608-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.57.4e-11147190755
                            HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              ErrRR r+++++  Lr+l+P+      +K++Ka+i+  Av Y+++Lq
  SMil_00022608-RA_Salv 147 VSERRRRGRMKEKLYALRSLVPNI-----TKMDKASIVGDAVLYVQDLQ 190
                            57*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.4E-15139206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.396140189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-14142209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.91E-13142194No hitNo description
SMARTSM003531.7E-13146195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-8148190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034756Biological Processregulation of iron ion transport
GO:0071281Biological Processcellular response to iron ion
GO:0071369Biological Processcellular response to ethylene stimulus
GO:0071732Biological Processcellular response to nitric oxide
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MDRFDDENGG IPFPQYYASE FGLIDFMDEA NVDQFIDLIR GENIQNDQPI FNLFDQDYQY  60
CRGDESIHVA AAVEDCHFLP PPPPQAELFD FDAGHEFGLL NACEITQAEE EELLMDEDDQ  120
SSGSGTTTTA TGSRSASGKA DRSKTLVSER RRRGRMKEKL YALRSLVPNI TKMDKASIVG  180
DAVLYVQDLQ IQARKIRAEI AGFEEKTQHK KTTQNGSKSN STTCFYPTTK KIFKMEVSQV  240
EDRGFYVRIV ANGGHGVAAL LYRALESLTT FDVRSSSLAA SSDQNYVFTF TLHTMEGGVE  300
VNLQSVKVWI ASAFLNQGFD FQTS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2575020.0KP257502.1 Salvia miltiorrhiza clone 69 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089193.13e-98transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR
TrEMBLA0A0H3YB440.0A0A0H3YB44_SALMI; Basic helix-loop-helix transcription factor
STRINGMigut.D02289.1.p7e-92(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37822340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.13e-67FER-like regulator of iron uptake